PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G165200.2 | ||||||||
Common Name | PHAVU_007G165200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C3H | ||||||||
Protein Properties | Length: 344aa MW: 37020.9 Da PI: 8.7619 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 1e-11 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ ++C +++rtG C yG+rC+++H++ Phvul.007G165200.2 49 PGVPNCVYYMRTGVCGYGSRCRYNHPR 75 5789*********************96 PP | |||||||
2 | zf-CCCH | 41.1 | 2.9e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Phvul.007G165200.2 96 EPPCQYYLKTGTCKFGASCKFHHPK 120 79*********************96 PP | |||||||
3 | zf-CCCH | 38.2 | 2.3e-12 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ Phvul.007G165200.2 141 GEKECSYYLKTGQCKFGVTCKFHHPQ 166 7899********************97 PP | |||||||
4 | zf-CCCH | 35.6 | 1.6e-11 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+rtG Ck+G C+++H++ Phvul.007G165200.2 297 PGEPECQYFLRTGDCKFGLACRYHHPR 323 5799*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.704 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3E-6 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.9E-9 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-6 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-5 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.995 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-10 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 98 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.84 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.0E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.2E-10 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-6 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.6E-5 | 296 | 323 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.718 | 296 | 324 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-9 | 298 | 323 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-5 | 301 | 324 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MDLYGRGPVR NGSNPLNQPE WPSPGIDTAL EESMWHLTLG GGESYPERPG VPNCVYYMRT 60 GVCGYGSRCR YNHPRDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGTCKF GASCKFHHPK 120 NGGGYLSQAP LNTCGYPLRP GEKECSYYLK TGQCKFGVTC KFHHPQPSGT PLPASAPQFY 180 QQVQSPAVPV PEQYGGASAN LRVARPPVLS GSYVQGAYGP VLLSPGVVQF PGWSHYSAPV 240 SPVLSPGAQT AVGATSLYGV TQLSSPTSAF ARPYTPLSST TGPSGNILKD QLFPERPGEP 300 ECQYFLRTGD CKFGLACRYH HPRDHIVARP FLSPIGLPLR PVV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G165200.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093745 | 0.0 | BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144549.1 | 0.0 | hypothetical protein PHAVU_007G165200g | ||||
Swissprot | Q84W91 | 1e-163 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | V7BI21 | 0.0 | V7BI21_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144548.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-159 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G165200.2 |
Entrez Gene | 18626104 |