PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G165200.1
Common NamePHAVU_007G165200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 467aa    MW: 49805.2 Da    PI: 8.7537
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G165200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-114975127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++ ++C +++rtG C yG+rC+++H++
  Phvul.007G165200.1 49 PGVPNCVYYMRTGVCGYGSRCRYNHPR 75
                        5789*********************96 PP
2zf-CCCH40.64.3e-1396120327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Phvul.007G165200.1  96 EPPCQYYLKTGTCKFGASCKFHHPK 120
                         79*********************96 PP
3zf-CCCH37.73.4e-12141166227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G +CkF+H++
  Phvul.007G165200.1 141 GEKECSYYLKTGQCKFGVTCKFHHPQ 166
                         7899********************97 PP
4zf-CCCH35.12.3e-11297323127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++f+rtG Ck+G  C+++H++
  Phvul.007G165200.1 297 PGEPECQYFLRTGDCKFGLACRYHHPR 323
                         5799*********************96 PP
5zf-CCCH34.43.6e-11342366226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +  +C f++++G+Ck+G++CkF H+
  Phvul.007G165200.1 342 GVQPCAFYLQNGHCKFGSTCKFDHP 366
                         6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.3E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7044876IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-85075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-55475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.99593121IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-693120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-696121IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-1096120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-598119IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84139167IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6141167IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9141166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4145165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718296324IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5296323IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-5301324IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.385340368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6342370IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-9342366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5344365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MDLYGRGPVR NGSNPLNQPE WPSPGIDTAL EESMWHLTLG GGESYPERPG VPNCVYYMRT  60
GVCGYGSRCR YNHPRDRAAV AAAVRATGEY PERVGEPPCQ YYLKTGTCKF GASCKFHHPK  120
NGGGYLSQAP LNTCGYPLRP GEKECSYYLK TGQCKFGVTC KFHHPQPSGT PLPASAPQFY  180
QQVQSPAVPV PEQYGGASAN LRVARPPVLS GSYVQGAYGP VLLSPGVVQF PGWSHYSAPV  240
SPVLSPGAQT AVGATSLYGV TQLSSPTSAF ARPYTPLSST TGPSGNILKD QLFPERPGEP  300
ECQYFLRTGD CKFGLACRYH HPRDHIVARP FLSPIGLPLR PGVQPCAFYL QNGHCKFGST  360
CKFDHPLGSL SYSPSVSSFI DVPVTPYPVG SLLSQLAPST SSELRPELMS GSKKESLSAR  420
IPSSGTSVGL IFSQGGSISL SDVQLSSQSS APLGSSRSTR QSGEIR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G165200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937450.0BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144548.10.0hypothetical protein PHAVU_007G165200g
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLV7BFC90.0V7BFC9_PHAVU; Uncharacterized protein
STRINGXP_007144548.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein