PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G159000.1 | ||||||||
Common Name | PHAVU_007G159000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 154aa MW: 16820.5 Da PI: 10.1213 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00025 | 28 | 50 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H+ +H Phvul.007G159000.1 28 FQCKTCNRKFSSFQALGGHLASH 50 89************999999988 PP | |||||||
2 | zf-C2H2 | 14.8 | 8.4e-05 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Phvul.007G159000.1 72 HECSICGQEFSLGQALGGHMRKH 94 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.7E-10 | 28 | 52 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.138 | 28 | 55 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.82E-9 | 28 | 94 | No hit | No description |
SMART | SM00355 | 0.044 | 28 | 50 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 30 | 50 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.5E-5 | 70 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.2E-9 | 71 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.907 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.067 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MVAILKRQRE AESEEIKDLA KSFSPHEFQC KTCNRKFSSF QALGGHLASH KKPKLDGEEA 60 KDLSLGRKPK AHECSICGQE FSLGQALGGH MRKHKGSMNG GLSSSVIPKA PLLKRSNSSK 120 RVMCLELDLN LTPLENDLKL LFGNKAPTVH LSL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G159000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-126 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144473.1 | 1e-107 | hypothetical protein PHAVU_007G159000g | ||||
Swissprot | Q9SLD4 | 2e-41 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | V7BF63 | 1e-106 | V7BF63_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144473.1 | 1e-107 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 1e-43 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G159000.1 |
Entrez Gene | 18626040 |