PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G149000.1 | ||||||||
Common Name | PHAVU_007G149000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ARF | ||||||||
Protein Properties | Length: 709aa MW: 78518.8 Da PI: 7.4752 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73 | 3.5e-23 | 117 | 218 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f k+lt+sd+++ g +++p+ +ae++ ++ + + +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF Phvul.007G149000.1 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL- 204 89****************************997656666..69999********************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++ l+v+++r+ Phvul.007G149000.1 205 -RAENGDLCVGIRRA 218 .4488999****997 PP | |||||||
2 | Auxin_resp | 112 | 5.6e-37 | 286 | 369 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++k++FevvY+Prast+eF+vk+ ve+al+++++ G Rfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+ Phvul.007G149000.1 286 AANLAANKQPFEVVYYPRASTPEFCVKAPLVEAALQIRWCSGIRFKMAFETEDSSRISWfMGTISSVQVADPLNWPNSPWRLLQ 369 7899******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-29 | 110 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-36 | 111 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.61E-21 | 116 | 217 | No hit | No description |
PROSITE profile | PS50863 | 13.014 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-21 | 117 | 218 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-21 | 117 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.0E-32 | 286 | 369 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 21.217 | 622 | 702 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
MITFMDSKEK SKEAEKCLDP QLWHACAGGM VQMPAVNTKV YYFPQGHAEH ACGAVNFRTC 60 PKVSPLVPCR VASIKYMADP ETDEVYAKLR LAPMSVNDAD YDRDVVGPET QDKPASFAKT 120 LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQNILAK DVHGETWKFR HIYRGTPRRH 180 LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKK GIGGGPEGSS GWNPAGGSCP 240 MAYGGFSPFL REEDNRILRN GNINGLNPSV TMTGRGKVRP EAVVEAANLA ANKQPFEVVY 300 YPRASTPEFC VKAPLVEAAL QIRWCSGIRF KMAFETEDSS RISWFMGTIS SVQVADPLNW 360 PNSPWRLLQV TWDEPDLLQN VRRVSPWLVE LVSNMPAIHL SPFSPPRKKL RLHQHPDFPL 420 DGQIHLPTFS GNLLGPSNTN QFGCLPESTP AGMQGARHAH YGLSISDLHF SKLHSGLFPA 480 GFPPLDHAAT PMRISNNLTL QKPTISENVS CLLSMANSTQ SSKKMDEGKK TPQLVLFGQK 540 ILTEQQISLS SSVDTFSPVL NRNCSSDGHA DKVANFSDGS GSALHQHQQQ HGQHQHQHER 600 SSCERFQWYR DNPQETEAGL ETGHCKVFME SEDVGRTMDL SLLRSYDELY RRLTDMFGIE 660 KSEMLSQVLY RDSNGAVKHI GDEPFSDFIK SARRLTILMD SGSNNVGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-75 | 8 | 390 | 41 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G149000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144353.1 | 0.0 | hypothetical protein PHAVU_007G149000g | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | V7BEU5 | 0.0 | V7BEU5_PHAVU; Auxin response factor | ||||
STRING | XP_007144353.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF637 | 34 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G149000.1 |
Entrez Gene | 18625939 |
Publications ? help Back to Top | |||
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