PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G149000.1
Common NamePHAVU_007G149000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 709aa    MW: 78518.8 Da    PI: 7.4752
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G149000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.5e-23117218199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF  
  Phvul.007G149000.1 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL- 204
                         89****************************997656666..69999********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Phvul.007G149000.1 205 -RAENGDLCVGIRRA 218
                         .4488999****997 PP
2Auxin_resp1125.6e-37286369183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a++k++FevvY+Prast+eF+vk+  ve+al+++++ G Rfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+
  Phvul.007G149000.1 286 AANLAANKQPFEVVYYPRASTPEFCVKAPLVEAALQIRWCSGIRFKMAFETEDSSRISWfMGTISSVQVADPLNWPNSPWRLLQ 369
                         7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-29110218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-36111220IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-21116217No hitNo description
PROSITE profilePS5086313.014117219IPR003340B3 DNA binding domain
PfamPF023622.2E-21117218IPR003340B3 DNA binding domain
SMARTSM010196.0E-21117219IPR003340B3 DNA binding domain
PfamPF065076.0E-32286369IPR010525Auxin response factor
PROSITE profilePS5174521.217622702IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MITFMDSKEK SKEAEKCLDP QLWHACAGGM VQMPAVNTKV YYFPQGHAEH ACGAVNFRTC  60
PKVSPLVPCR VASIKYMADP ETDEVYAKLR LAPMSVNDAD YDRDVVGPET QDKPASFAKT  120
LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQNILAK DVHGETWKFR HIYRGTPRRH  180
LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKK GIGGGPEGSS GWNPAGGSCP  240
MAYGGFSPFL REEDNRILRN GNINGLNPSV TMTGRGKVRP EAVVEAANLA ANKQPFEVVY  300
YPRASTPEFC VKAPLVEAAL QIRWCSGIRF KMAFETEDSS RISWFMGTIS SVQVADPLNW  360
PNSPWRLLQV TWDEPDLLQN VRRVSPWLVE LVSNMPAIHL SPFSPPRKKL RLHQHPDFPL  420
DGQIHLPTFS GNLLGPSNTN QFGCLPESTP AGMQGARHAH YGLSISDLHF SKLHSGLFPA  480
GFPPLDHAAT PMRISNNLTL QKPTISENVS CLLSMANSTQ SSKKMDEGKK TPQLVLFGQK  540
ILTEQQISLS SSVDTFSPVL NRNCSSDGHA DKVANFSDGS GSALHQHQQQ HGQHQHQHER  600
SSCERFQWYR DNPQETEAGL ETGHCKVFME SEDVGRTMDL SLLRSYDELY RRLTDMFGIE  660
KSEMLSQVLY RDSNGAVKHI GDEPFSDFIK SARRLTILMD SGSNNVGV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-75839041388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G149000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144353.10.0hypothetical protein PHAVU_007G149000g
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLV7BEU50.0V7BEU5_PHAVU; Auxin response factor
STRINGXP_007144353.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]