PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G139300.1 | ||||||||
Common Name | PHAVU_007G139300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 311aa MW: 33759.4 Da PI: 6.7483 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.2 | 9.2e-34 | 39 | 93 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl Phvul.007G139300.1 39 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 93 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-32 | 36 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.726 | 36 | 96 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 9.0E-24 | 39 | 94 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.08E-16 | 39 | 95 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.9E-8 | 41 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.6E-13 | 137 | 182 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MFSRLIHPHE GGVAQEDMQA ASNHAHLGDP CLVLTSDPKP RLRWTADLHE RFVDAVTQLG 60 GASKATPKAI MRTMNVKGLT LYHLKSHLQK YRLGKQSGKD SDEGCKDGMS GSYLQESPGT 120 GNSSPNLPTS EANEGHEVKE ALRAQMEVQS KLHLLVEAEK HLQIRQDAER RYMGMLERAC 180 KMLADQFIGD MIMETDGQKF QGLESKTPRS SLVDHVGYFP PVCSEVGGMH VSEVAAILHP 240 QGADCSTESC LTSLESLGGL TLEGSPGGSK KRMLSLDSMV APLIWSEANT RTQGIHLGQV 300 NPPGITRYGM * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-19 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-19 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-19 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-19 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-19 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-19 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-19 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-19 | 39 | 95 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G139300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095107 | 0.0 | BT095107.1 Soybean clone JCVI-FLGm-19M17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144235.1 | 0.0 | hypothetical protein PHAVU_007G139300g | ||||
TrEMBL | V7BEH4 | 0.0 | V7BEH4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144235.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6618 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 9e-66 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G139300.1 |
Entrez Gene | 18625838 |