PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G134000.1
Common NamePHAVU_007G134000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YB
Protein Properties Length: 174aa    MW: 18854.1 Da    PI: 6.1185
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G134000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.81.2e-5626121297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         reqdr+lPian+srimkk lP n+ki+kdak+t+qecvsefisf+tseas+kcq+ekrktingddllwa+atlGfedy+eplkvyl++yre
  Phvul.007G134000.1  26 REQDRYLPIANISRIMKKGLPPNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRE 116
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +eg++
  Phvul.007G134000.1 117 AEGDT 121
                         ***97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.7E-5421136IPR009072Histone-fold
SuperFamilySSF471132.64E-4128143IPR009072Histone-fold
PfamPF008088.4E-293195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.2E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.2E-217896No hitNo description
PRINTSPR006152.2E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSDAPASPSH ESGGEQSPRG SSSGAREQDR YLPIANISRI MKKGLPPNGK IAKDAKDTMQ  60
ECVSEFISFI TSEASEKCQK EKRKTINGDD LLWAMATLGF EDYIEPLKVY LARYREAEGD  120
TKGSARGGDG SARPDQVGLA GQNSQLVHQG SLNYISLQVQ PQHMVLPSMQ SHE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4826116292Transcription factor HapC (Eurofung)
4g92_B1e-4826116292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G134000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7755291e-178FJ775529.1 Glycine max CCAAT-binding transcription factor family protein (NF-YB1a) mRNA, complete cds.
GenBankFJ7755301e-178FJ775530.1 Glycine max CCAAT-binding transcription factor family protein (NF-YB1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144163.11e-127hypothetical protein PHAVU_007G134000g
SwissprotQ8VYK41e-78NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLV7BEC31e-125V7BEC3_PHAVU; Uncharacterized protein
STRINGXP_007144163.11e-126(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.36e-81nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]