PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G125400.1 | ||||||||
Common Name | PHAVU_007G125400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 181aa MW: 20454.4 Da PI: 5.5357 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 32 | 54 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H Phvul.007G125400.1 32 YECTFCKRGFTNAQALGGHMNIH 54 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 26 | 57 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 5.98E-7 | 29 | 58 | No hit | No description |
SMART | SM00355 | 0.0097 | 32 | 54 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.468 | 32 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 34 | 54 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MNSEKPVSPE NLSDENDQEE AHDDTGGTKR SYECTFCKRG FTNAQALGGH MNIHRRDRAK 60 AKQLTLDASP SMNKFNSDES IVFPFVSETL NQPARPYSIL ESQRNCDMQF HPPAPASAFY 120 YELYDPRSRS LTFNQELGGA NLSLQIGQTH HVDDNIHQVR RGNQKDNEVD LELRLGHDPY 180 * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 62 | RRDRAKAKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G125400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007144064.1 | 1e-134 | hypothetical protein PHAVU_007G125400g | ||||
TrEMBL | V7BGP5 | 1e-133 | V7BGP5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007144064.1 | 1e-134 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1686 | 30 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 1e-17 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G125400.1 |
Entrez Gene | 18625691 |