PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G114300.1 | ||||||||
Common Name | PHAVU_007G114300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 198aa MW: 22395.4 Da PI: 8.4926 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.4 | 5.5e-31 | 15 | 71 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + +rY eClkNhAa++Gg+a+DGCgEf+++ geegt ++lkC+AC+CHRnFHR+e e+ Phvul.007G114300.1 15 KVIRYTECLKNHAARIGGNATDGCGEFIAD-GEEGTLEGLKCSACNCHRNFHRKEIES 71 5789*************************8.999********************9876 PP | |||||||
2 | Homeobox | 14.5 | 6e-05 | 131 | 186 | 1 | 52 |
TT--SS--HHHHHHHHHHHH.....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe.....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ft+eq e + lF+ + ++++++ ++ +++g++ r+ kvW +N + Phvul.007G114300.1 131 KRFRTKFTQEQKEKML-LFAeragwRLQKLDESVVQKFCQEIGIKRRVLKVWIHNNK 186 789***********95.6665777789***************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.9E-28 | 17 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-20 | 17 | 70 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.8E-28 | 18 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.397 | 19 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 120 | 191 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.54E-18 | 124 | 189 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.3E-27 | 130 | 187 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MESSNLHADK RADKKVIRYT ECLKNHAARI GGNATDGCGE FIADGEEGTL EGLKCSACNC 60 HRNFHRKEIE SSDSYFTPLM IMPDTTQIGP IWAHLSPNKS GSISPSDVSD EKDCEDGMTK 120 EEGNPTEKVK KRFRTKFTQE QKEKMLLFAE RAGWRLQKLD ESVVQKFCQE IGIKRRVLKV 180 WIHNNKNTFV KRNPSTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 5e-24 | 131 | 188 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G114300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007143929.1 | 1e-148 | hypothetical protein PHAVU_007G114300g | ||||
Swissprot | O64722 | 4e-60 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | V7BGD8 | 1e-146 | V7BGD8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007143929.1 | 1e-147 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 1e-62 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G114300.1 |
Entrez Gene | 18625576 |
Publications ? help Back to Top | |||
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