PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G102800.1 | ||||||||
Common Name | PHAVU_007G102800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | RAV | ||||||||
Protein Properties | Length: 362aa MW: 39472.3 Da PI: 9.0956 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 43.8 | 6.3e-14 | 53 | 101 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g Phvul.007G102800.1 53 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAQRFRG 101 89****9888.8*********3.....5**********99*************98 PP | |||||||
2 | B3 | 92 | 4.5e-29 | 174 | 271 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k+ tpsdv+k++rlv+pk++ae+h ++++ l +ed g++W+++++y+++s++yvltkGW++Fvk+n+L++ Phvul.007G102800.1 174 FEKTVTPSDVGKLNRLVIPKQHAEKHfplstgsgsgvslctAAAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKENNLRA 264 99***************************9999988888885566799******************************************* PP T-EEEEE CS B3 77 gDfvvFk 83 gD v F Phvul.007G102800.1 265 GDAVRFF 271 ****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.42E-17 | 53 | 109 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-9 | 53 | 101 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.36E-26 | 53 | 108 | No hit | No description |
PROSITE profile | PS51032 | 20.35 | 54 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-29 | 54 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-20 | 54 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-39 | 167 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.27E-29 | 172 | 284 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.78E-28 | 173 | 282 | No hit | No description |
SMART | SM01019 | 4.0E-22 | 174 | 287 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.437 | 174 | 288 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-26 | 174 | 271 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MDAGSSTDET TTTSDSLSLP PNQSPPPLIR VGSGGVDPDA VSGEAESRKL PSSKYKGVVP 60 QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDIAAQRFR GRDAVTNFKP LAGAGDDAES 120 EFLNSHSKSE IVDMLRKHTY DDELQQSTRC GRRRRAAEAA SSGAFDPQAR EQLFEKTVTP 180 SDVGKLNRLV IPKQHAEKHF PLSTGSGSGV SLCTAAAAAK GVLLNFEDVG GKVWRFRYSY 240 WNSSQSYVLT KGWSRFVKEN NLRAGDAVRF FKSTGPDRQL YIDCKARSSG GICELNNNNA 300 GGLFVPVGPV VEQVQMVRLF GVNLLKLPGS DGVRVGYEGK RKEMELFAFE CSKKLKVIGA 360 L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 3e-53 | 171 | 288 | 11 | 118 | DNA-binding protein RAV1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 355 | KRKEMELFAFECSKKLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G102800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007143801.1 | 0.0 | hypothetical protein PHAVU_007G102800g | ||||
Swissprot | Q9C6M5 | 1e-131 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | V7BDZ9 | 0.0 | V7BDZ9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007143801.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2920 | 32 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-126 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G102800.1 |
Entrez Gene | 18625459 |