PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G101900.1
Common NamePHAVU_007G101900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 339aa    MW: 37503.1 Da    PI: 6.1904
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G101900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92.1e-14156202354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Phvul.007G101900.1 156 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 202
                         79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-12156202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14157211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-14157209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.98E-5166205No hitNo description
CDDcd048734.75E-6239282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MIQEDQGQCS SQAINNYHQA YQEQLLLQQQ MQQQNNDIFG GGGRAGLNMY PGEVSQIMHQ  60
PWSMPHNQVH HPFNPVREHD PFLVPPQPSP YASLFNRRGH SLQFAYDGSS SDHLRIISDT  120
LGPVVQPGSA PFGLQTELAK MTAQEIMEAK ALAASKSHSE AERRRRERIN NHLAKLRSLL  180
PSTTKTDKAS LLAEVIQHVK ELKRQTSLIA ESSPVPTEAD ELTVVDEADE DGKSVIKASL  240
CCEDRSDLFP ELIGTLKALR LRTLKAEITT LGGRVKNVLF ITGEEEDSSS GSEDHNHQQQ  300
YCISSIQEAL KAVMEKSVGD ESASANIKRQ RTNIISMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G101900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958850.0BT095885.1 Soybean clone JCVI-FLGm-20E1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143790.10.0hypothetical protein PHAVU_007G101900g
SwissprotQ9S7Y11e-101BH030_ARATH; Transcription factor bHLH30
TrEMBLV7BD910.0V7BD91_PHAVU; Uncharacterized protein
STRINGXP_007143790.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-95bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]