PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G095000.1
Common NamePHAVU_007G095000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 609aa    MW: 66716.4 Da    PI: 7.1821
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G095000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-23119220199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF  
  Phvul.007G095000.1 119 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFL- 206
                         89****************************986445444..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+++r+
  Phvul.007G095000.1 207 -RAENGDLCVGIRRA 220
                         .4488999****997 PP
2Auxin_resp113.81.6e-37277358383
          Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         + a ++s+FevvY+Pras++eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+rWp+S+Wr+L+
  Phvul.007G095000.1 277 SCAVNGSPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPIRWPDSPWRLLQ 358
                         567899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-30110220IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-37113222IPR015300DNA-binding pseudobarrel domain
CDDcd100172.84E-22118219No hitNo description
SMARTSM010191.8E-20119221IPR003340B3 DNA binding domain
PfamPF023621.4E-21119220IPR003340B3 DNA binding domain
PROSITE profilePS5086313.253119221IPR003340B3 DNA binding domain
PfamPF065073.9E-33276358IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MFKVMENMER SSERCLDSQL WHACAGAMVQ MPPLNTKVFY FPQGHAEHAH GKVDFGQTRV  60
PPLVPCRLSG MKYMADPDTD EVYVKMRLIP LREHELDLED DCFLGNTGVE GQEKPPTSFA  120
KTLTQSDANN GGGFSVPRYC AETIFPRLDY SAEPPVQTII AKDMHGQCWK FRHIYRGTPR  180
RHLLTTGWSN FVNQKRLVAG DSIVFLRAEN GDLCVGIRRA KKGIGGGSEF SSGWNPLFGG  240
GSGFLCGSES SLVGGAKGGG DEMVGRVAAE SVVEAISCAV NGSPFEVVYY PRASSPEFCV  300
KASVVKAAMQ IQWCSGMRFK MPFETEDSSR ISWFMGTISS VQVADPIRWP DSPWRLLQVV  360
WDEPDLLHNV KCVNPWLVEL VSNMPTFNLS AYSPPRKKQR FVHDPYFQVI NQLPMPSFSS  420
NLLNYTNSLC NIENSSSAGI QGARHAQFGL SPSDFPFNKL PAEMLLGGFS RLDHATKPIR  480
PPCGTYKNNT SNTTTKTNVD ISCLLTVGNP NQNFKESNAT KAPHILLFGK LIHTEQKSSN  540
TSSASTTGNS VSEGNSLKTS NASDGLGSAL HQNSPIETNN SDGGSPWYKE QHMADLGTDN  600
VNTLCIAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-80237937388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G095000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143708.10.0hypothetical protein PHAVU_007G095000g
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLV7BCY20.0V7BCY2_PHAVU; Auxin response factor
STRINGXP_007143708.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]