PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G082000.2
Common NamePHAVU_007G082000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 269aa    MW: 28556.4 Da    PI: 7.8688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G082000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79.4e-2165115256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  Phvul.007G082000.2  65 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRGN 115
                         7********.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-2365123IPR016177DNA-binding domain
PfamPF008471.9E-1465114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3365123IPR001471AP2/ERF domain
SMARTSM003804.6E-3865128IPR001471AP2/ERF domain
PROSITE profilePS5103225.71265122IPR001471AP2/ERF domain
PRINTSPR003675.4E-126677IPR001471AP2/ERF domain
CDDcd000184.97E-1573124No hitNo description
PRINTSPR003675.4E-1288104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MMSRFMHAPS PDLSPALLGS GSGSGSGWVG QKRAREDESN AAASGGEGGS SQSASQEESG  60
ERRRRYRGVR QRPWGKWAAE IRDPHKAARV WLGTFDTAEA AARAYDEAAL RFRGNRAKLN  120
FPENVTAVRP PHLPNFPATA LAGSSDVPAV TGYSPAVMQG APFQSSSDLL RDYWGYSLLL  180
RSTGDFHGLE QWFYDSQMAA LQSSSSPLPP AYAPSSASFP LFSSQQMGVF RPPGQQPHGG  240
GDGGSGSEFP PSSWSDTSGY PPPPPPPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2364126467ATERF1
3gcc_A7e-2364126467ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16065ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G082000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143561.10.0hypothetical protein PHAVU_007G082000g
RefseqXP_007143562.10.0hypothetical protein PHAVU_007G082000g
TrEMBLV7BGE50.0V7BGE5_PHAVU; Uncharacterized protein
STRINGXP_007143561.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-16related to AP2 6