PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G067500.2

Common Name

PHAVU_007G067500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HD-ZIP

Protein Properties

Length: 753aa MW: 82489 Da PI: 5.8444

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G067500.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.4	1.9e-21	54	109	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+k+lgL+ +qVk+WFqNrR+++k Phvul.007G067500.2 54 KKRYHRHTPHQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMK 109 688999***********************************************999 PP
2	START	180.3	1.1e-56	264	487	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 la++a++el+k+ +ae+p+W ks e n +e+ + f++ + + +ea r++g+v+ ++ lve+l+d + +W e+++ +a Phvul.007G067500.2 264 LALAAMEELLKMTQAESPLWIKSLdgekEVFNHEEYARLFSPCIGpkptgYVTEATRETGIVIINSLALVETLMDAN-RWAEMFPsmiaRA 353 6899******************876666688999999999888****************************.***999999 PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 l+vis+g galq+m ae q+lsplvp R + f+R+++q+ +g+w++vdvS+d + + ++++ +++lpSg+++++++ng+sk Phvul.007G067500.2 354 INLDVISNGmggtrnGALQVMHAEVQLLSPLVPvRQVRFIRFCKQHAEGVWAVVDVSIDIVHDSANAQPFMSCRRLPSGCIVQDMPNGYSK 444 99******************************************************999999********************* PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtw+eh++++++++h+l+r+l++sg+ +ga +w atlqrqce+ Phvul.007G067500.2 445 VTWLEHWEYDESVVHQLYRPLLSSGVGFGAHRWIATLQRQCEC 487 ***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.55E-20	38	111	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-22	40	105	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.686	51	111	IPR001356	Homeobox domain
SMART	SM00389	2.3E-19	52	115	IPR001356	Homeobox domain
CDD	cd00086	3.21E-19	53	111	No hit	No description
Pfam	PF00046	4.1E-19	54	109	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.364	254	490	IPR002913	START domain
SuperFamily	SSF55961	1.4E-31	256	487	No hit	No description
CDD	cd08875	2.36E-119	258	486	No hit	No description
SMART	SM00234	4.6E-37	263	487	IPR002913	START domain
Pfam	PF01852	5.4E-47	264	487	IPR002913	START domain
SuperFamily	SSF55961	3.02E-21	515	746	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MEGPSEIGLI GENFDAGLMG RMRDDEYESR SGSDNFDGVS GDDQDGGDDQ PQRKKRYHRH 60 TPHQIQELES FFKECPHPDE KQRLDLSKRL GLENKQVKFW FQNRRTQMKT QLERHENIML 120 RQENDKLRAE NSLMKEAMSN PVCNSCGGPA IPGQISFEEH QIRIENARLK DELNRICALA 180 NKFLGKPISS MTSPMALPNS NSGLELGIGR NGLGGSSTLG TPLPMGLDLG DGVLGTQTAM 240 PGIRPSLGLM GNEVQLERSM LIDLALAAME ELLKMTQAES PLWIKSLDGE KEVFNHEEYA 300 RLFSPCIGPK PTGYVTEATR ETGIVIINSL ALVETLMDAN RWAEMFPSMI ARAINLDVIS 360 NGMGGTRNGA LQVMHAEVQL LSPLVPVRQV RFIRFCKQHA EGVWAVVDVS IDIVHDSANA 420 QPFMSCRRLP SGCIVQDMPN GYSKVTWLEH WEYDESVVHQ LYRPLLSSGV GFGAHRWIAT 480 LQRQCECLAI LMSSSISSDD HTALSQAGRR SMLKLAQRMT GNFCSGVCAS SARKWDMLHI 540 GTLGDDMKVM TRKNVDDPGE PPGIVLSAAT SVWMPVSRQR VFDFLRDERL RSEWDILSNG 600 GPMQEMVHIA KGQGHGNCVS LLRANAVNAN DSSMLILQET WMDASCSVVV YAPVDVQSLN 660 VVMSGGDSAY VALLPSGFAI LPDGHCNNNS SCNGTMQKGG GGEESGGSLL TVGFQILVNS 720 LPTAKLTVES VDTVNNLISC TIQKIKGALR VA*

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MEGPSEIGLI GENFDAGLMG RMRDDEYESR SGSDNFDGVS GDDQDGGDDQ PQRKKRYHRH  60
TPHQIQELES FFKECPHPDE KQRLDLSKRL GLENKQVKFW FQNRRTQMKT QLERHENIML  120
RQENDKLRAE NSLMKEAMSN PVCNSCGGPA IPGQISFEEH QIRIENARLK DELNRICALA  180
NKFLGKPISS MTSPMALPNS NSGLELGIGR NGLGGSSTLG TPLPMGLDLG DGVLGTQTAM  240
PGIRPSLGLM GNEVQLERSM LIDLALAAME ELLKMTQAES PLWIKSLDGE KEVFNHEEYA  300
RLFSPCIGPK PTGYVTEATR ETGIVIINSL ALVETLMDAN RWAEMFPSMI ARAINLDVIS  360
NGMGGTRNGA LQVMHAEVQL LSPLVPVRQV RFIRFCKQHA EGVWAVVDVS IDIVHDSANA  420
QPFMSCRRLP SGCIVQDMPN GYSKVTWLEH WEYDESVVHQ LYRPLLSSGV GFGAHRWIAT  480
LQRQCECLAI LMSSSISSDD HTALSQAGRR SMLKLAQRMT GNFCSGVCAS SARKWDMLHI  540
GTLGDDMKVM TRKNVDDPGE PPGIVLSAAT SVWMPVSRQR VFDFLRDERL RSEWDILSNG  600
GPMQEMVHIA KGQGHGNCVS LLRANAVNAN DSSMLILQET WMDASCSVVV YAPVDVQSLN  660
VVMSGGDSAY VALLPSGFAI LPDGHCNNNS SCNGTMQKGG GGEESGGSLL TVGFQILVNS  720
LPTAKLTVES VDTVNNLISC TIQKIKGALR VA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G067500.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007143378.1	0.0	hypothetical protein PHAVU_007G067500g
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	V7BBY4	0.0	V7BBY4_PHAVU; Uncharacterized protein
STRING	XP_007143378.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Phvul.007G067500.2
Entrez Gene	18625096

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]