PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G067500.1

Common Name

PHAVU_007G067500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HD-ZIP

Protein Properties

Length: 767aa MW: 84134.8 Da PI: 6.0534

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G067500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.3	1.9e-21	68	123	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+k+lgL+ +qVk+WFqNrR+++k Phvul.007G067500.1 68 KKRYHRHTPHQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMK 123 688999***********************************************999 PP
2	START	180.2	1.1e-56	278	501	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 la++a++el+k+ +ae+p+W ks e n +e+ + f++ + + +ea r++g+v+ ++ lve+l+d + +W e+++ +a Phvul.007G067500.1 278 LALAAMEELLKMTQAESPLWIKSLdgekEVFNHEEYARLFSPCIGpkptgYVTEATRETGIVIINSLALVETLMDAN-RWAEMFPsmiaRA 367 6899******************876666688999999999888****************************.***999999 PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 l+vis+g galq+m ae q+lsplvp R + f+R+++q+ +g+w++vdvS+d + + ++++ +++lpSg+++++++ng+sk Phvul.007G067500.1 368 INLDVISNGmggtrnGALQVMHAEVQLLSPLVPvRQVRFIRFCKQHAEGVWAVVDVSIDIVHDSANAQPFMSCRRLPSGCIVQDMPNGYSK 458 99******************************************************999999********************* PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtw+eh++++++++h+l+r+l++sg+ +ga +w atlqrqce+ Phvul.007G067500.1 459 VTWLEHWEYDESVVHQLYRPLLSSGVGFGAHRWIATLQRQCEC 501 ***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.59E-20	52	125	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-22	54	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.686	65	125	IPR001356	Homeobox domain
SMART	SM00389	2.3E-19	66	129	IPR001356	Homeobox domain
CDD	cd00086	3.35E-19	67	125	No hit	No description
Pfam	PF00046	4.2E-19	68	123	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	41.364	268	504	IPR002913	START domain
SuperFamily	SSF55961	1.47E-31	270	501	No hit	No description
CDD	cd08875	2.93E-119	272	500	No hit	No description
SMART	SM00234	4.6E-37	277	501	IPR002913	START domain
Pfam	PF01852	5.6E-47	278	501	IPR002913	START domain
SuperFamily	SSF55961	3.09E-21	529	760	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MQNSSSFSYS NQRKMEGPSE IGLIGENFDA GLMGRMRDDE YESRSGSDNF DGVSGDDQDG 60 GDDQPQRKKR YHRHTPHQIQ ELESFFKECP HPDEKQRLDL SKRLGLENKQ VKFWFQNRRT 120 QMKTQLERHE NIMLRQENDK LRAENSLMKE AMSNPVCNSC GGPAIPGQIS FEEHQIRIEN 180 ARLKDELNRI CALANKFLGK PISSMTSPMA LPNSNSGLEL GIGRNGLGGS STLGTPLPMG 240 LDLGDGVLGT QTAMPGIRPS LGLMGNEVQL ERSMLIDLAL AAMEELLKMT QAESPLWIKS 300 LDGEKEVFNH EEYARLFSPC IGPKPTGYVT EATRETGIVI INSLALVETL MDANRWAEMF 360 PSMIARAINL DVISNGMGGT RNGALQVMHA EVQLLSPLVP VRQVRFIRFC KQHAEGVWAV 420 VDVSIDIVHD SANAQPFMSC RRLPSGCIVQ DMPNGYSKVT WLEHWEYDES VVHQLYRPLL 480 SSGVGFGAHR WIATLQRQCE CLAILMSSSI SSDDHTALSQ AGRRSMLKLA QRMTGNFCSG 540 VCASSARKWD MLHIGTLGDD MKVMTRKNVD DPGEPPGIVL SAATSVWMPV SRQRVFDFLR 600 DERLRSEWDI LSNGGPMQEM VHIAKGQGHG NCVSLLRANA VNANDSSMLI LQETWMDASC 660 SVVVYAPVDV QSLNVVMSGG DSAYVALLPS GFAILPDGHC NNNSSCNGTM QKGGGGEESG 720 GSLLTVGFQI LVNSLPTAKL TVESVDTVNN LISCTIQKIK GALRVA*

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MQNSSSFSYS NQRKMEGPSE IGLIGENFDA GLMGRMRDDE YESRSGSDNF DGVSGDDQDG  60
GDDQPQRKKR YHRHTPHQIQ ELESFFKECP HPDEKQRLDL SKRLGLENKQ VKFWFQNRRT  120
QMKTQLERHE NIMLRQENDK LRAENSLMKE AMSNPVCNSC GGPAIPGQIS FEEHQIRIEN  180
ARLKDELNRI CALANKFLGK PISSMTSPMA LPNSNSGLEL GIGRNGLGGS STLGTPLPMG  240
LDLGDGVLGT QTAMPGIRPS LGLMGNEVQL ERSMLIDLAL AAMEELLKMT QAESPLWIKS  300
LDGEKEVFNH EEYARLFSPC IGPKPTGYVT EATRETGIVI INSLALVETL MDANRWAEMF  360
PSMIARAINL DVISNGMGGT RNGALQVMHA EVQLLSPLVP VRQVRFIRFC KQHAEGVWAV  420
VDVSIDIVHD SANAQPFMSC RRLPSGCIVQ DMPNGYSKVT WLEHWEYDES VVHQLYRPLL  480
SSGVGFGAHR WIATLQRQCE CLAILMSSSI SSDDHTALSQ AGRRSMLKLA QRMTGNFCSG  540
VCASSARKWD MLHIGTLGDD MKVMTRKNVD DPGEPPGIVL SAATSVWMPV SRQRVFDFLR  600
DERLRSEWDI LSNGGPMQEM VHIAKGQGHG NCVSLLRANA VNANDSSMLI LQETWMDASC  660
SVVVYAPVDV QSLNVVMSGG DSAYVALLPS GFAILPDGHC NNNSSCNGTM QKGGGGEESG  720
GSLLTVGFQI LVNSLPTAKL TVESVDTVNN LISCTIQKIK GALRVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G067500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007143378.1	0.0	hypothetical protein PHAVU_007G067500g
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	V7BBY4	0.0	V7BBY4_PHAVU; Uncharacterized protein
STRING	XP_007143378.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Phvul.007G067500.1
Entrez Gene	18625096

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]