PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G065100.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26788.3 Da PI: 8.7176 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93 | 1.4e-29 | 30 | 80 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri nk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gkl+ ys+ Phvul.007G065100.2 30 ERIHNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYST 80 69***********************************************96 PP | |||||||
2 | K-box | 58.2 | 3.7e-20 | 101 | 180 | 6 | 85 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 g ++e + ++ l+qel L+ + e+Lqr+qR+llGe+Le+Ls+keL++Le+qL++ l + R++ ++ l++ i+el k++ Phvul.007G065100.2 101 GDDAEPQSEQCLYQELLVLRIKHESLQRTQRNLLGEELEPLSMKELHNLEKQLDRTLAQARKHLSQKLVSRIDELHGKQE 180 4456778899****************************************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.118 | 22 | 82 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.8E-38 | 22 | 81 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.72E-31 | 23 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.70E-40 | 23 | 93 | No hit | No description |
PRINTS | PR00404 | 9.9E-30 | 24 | 44 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 24 | 78 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-25 | 31 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-30 | 44 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-30 | 59 | 80 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.4E-16 | 107 | 180 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.487 | 109 | 211 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MQYRERSEKG ERGAEKDQEG SMGRGKVVLE RIHNKINRQV TFSKRRNGLL KKAFELSVLC 60 DAEIALIIFS SRGKLFQYST TDINRIIERY RQCCFSMSQA GDDAEPQSEQ CLYQELLVLR 120 IKHESLQRTQ RNLLGEELEP LSMKELHNLE KQLDRTLAQA RKHLSQKLVS RIDELHGKQE 180 IGKCTQISED STNQFEAGTA GSLRLQQEQS SSKGKEVDTN NQWQLSIKWP YA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-24 | 22 | 90 | 1 | 69 | MEF2C |
5f28_B | 3e-24 | 22 | 90 | 1 | 69 | MEF2C |
5f28_C | 3e-24 | 22 | 90 | 1 | 69 | MEF2C |
5f28_D | 3e-24 | 22 | 90 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G065100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098753 | 1e-176 | BT098753.1 Soybean clone JCVI-FLGm-12N24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027934986.1 | 1e-122 | MADS-box transcription factor 17-like isoform X1 | ||||
Swissprot | Q6EU39 | 2e-57 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
Swissprot | Q8LLR1 | 2e-57 | MADS3_VITVI; Agamous-like MADS-box protein MADS3 | ||||
TrEMBL | A0A1S3V4F3 | 1e-120 | A0A1S3V4F3_VIGRR; MADS-box transcription factor 17 isoform X1 | ||||
STRING | GLYMA10G38580.1 | 1e-118 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.1 | 8e-53 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G065100.2 |