PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G060100.1
Common NamePHAVU_007G060100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 372aa    MW: 41771.8 Da    PI: 6.9137
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G060100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1424.6e-44982363135
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....seceaesssssasnsssg. 88 
                         +kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ aikel++++ s +     +c+ ++s+ s++n+s + 
  Phvul.007G060100.1  98 AKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELAQSKHSGSisggDKCSLDASVDSNNNKSLAg 188
                         79*************************************************************5555544457775555555555555555 PP

                 TCP  89 ...kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                            +  ++  ksk +qk++ +  + +kesr++arararert  km+ + +
  Phvul.007G060100.1 189 sgvD-GSKGRKSKWAQKDD-ACVQTKKESRERARARARERTCYKMCSNRR 236
                         5422.22222444444444.4688999*******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.5E-4098233IPR005333Transcription factor, TCP
PROSITE profilePS5136934.81499157IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.643213230IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MFSSTYDSNL FPNFPSSSYP ILPFLIDPEN DFATNTLFED PLLVPFTPIT HDPPFPEETV  60
ANFAVADCTA MLEQDANTNY GSNYGSMSNF LTQKPAIAKK DRHSKIHTSQ GLRDRRVRLS  120
SEIARKFFDL QDMLEFDKPS NTLEWLFTKS ENAIKELAQS KHSGSISGGD KCSLDASVDS  180
NNNKSLAGSG VDGSKGRKSK WAQKDDACVQ TKKESRERAR ARARERTCYK MCSNRRVQQD  240
FDERCSATAN TQMLHQLRSS ILPEPEPCGR WVQPYNPFLI HNEAPRDGFD VIEESIMIKR  300
NMKPSSMMAS HHQNQNQSQN LVIPRDASFY NNVCPLLPYS TPEWDTNGAV SGRSNFCAIG  360
TMNLSTCFMN P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215225RERARARARER
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G060100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143293.10.0hypothetical protein PHAVU_007G060100g
TrEMBLV7BBQ40.0V7BBQ4_PHAVU; Uncharacterized protein
STRINGXP_007143293.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.23e-26TCP family protein