PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G043200.1 | ||||||||
Common Name | PHAVU_007G043200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | FAR1 | ||||||||
Protein Properties | Length: 810aa MW: 92946.2 Da PI: 7.3381 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88 | 1.3e-27 | 49 | 135 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk++ dgkw ++++ +eHnHel p Phvul.007G043200.1 49 FYQEYAKSMGFTTSIKNSRRSKKTKEFIDAKFACSRYGVTPETDSG---SSRRPSVKKTDCKACMHVKRKADGKWIIHEFIKEHNHELLP 135 9***************************************999888...7788889*******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-24 | 49 | 135 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.1E-29 | 255 | 347 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.347 | 535 | 571 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.9E-6 | 545 | 570 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.4E-8 | 546 | 573 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0042753 | Biological Process | positive regulation of circadian rhythm | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 810 aa Download sequence Send to blast |
MGDALNEVQH RGGVPATSPK RDIALFEGDK DFEPHNGIEF ESHEAAYLFY QEYAKSMGFT 60 TSIKNSRRSK KTKEFIDAKF ACSRYGVTPE TDSGSSRRPS VKKTDCKACM HVKRKADGKW 120 IIHEFIKEHN HELLPALAYH FRIHRNVKLA EKNNIDILHA VSERTRKMYV EMSRQSGGCQ 180 NIGSFLSDIN YQFDRGQYLA LEEGDAQIML EYFKHVQKES PNFFYSIDLN EEQRLRNLFW 240 IDAKSINDYL SFNDVVSFDT TYIKSNDKLP FAPFVGVNHH SQPILLGCAL VADETKPTFV 300 WLMKTWLRAM GGKAPKVIIT DQDKALKAAI EEVFPNVRHC FSLCHILERI PENLSFVIKQ 360 HNNFLPKFNK CIFKSWTDEQ FDMRWWKMVS ICELQDDIWF QSLYEDRKKW VPTYMGDAFL 420 AGMSTPQRSE STSSFFDKYI HKKITLKEFV KQYGTILQNR YDEEAIADFE SLHKQPALKS 480 PSPWEKQMST VYTHAIFKKF QVEVLGVAGC QSRIEDGDGT VAKFIVQDYE KDEEFLVTWN 540 EMSSEVSCFC RLFEYKGFLC RHALSVLQRC GCSSVPSHYI LKRWTKDAKI KESMADRTRR 600 IQTRVQRYND LCKRAIDLSE EGSLSEENYS VVFRALVDAL KNCVLVNNSN NSGAETSNNA 660 YGFREAEENQ VPLALKPNKK RNAARKRKAQ LEQDVILVNA QDSLQQMDNL SSDAMTLNGY 720 YGTQQNVQGL QVQLNLMEPP HDGYYVNQQG MQGLGPLNSM APSHDGFFGT QQSIHGLGGQ 780 LEFRPATTFG YSLQDEPDPQ FHGNSSRNT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00434 | DAP | Transfer from AT4G15090 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G043200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007143097.1 | 0.0 | hypothetical protein PHAVU_007G043200g | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | V7BF45 | 0.0 | V7BF45_PHAVU; Uncharacterized protein | ||||
STRING | XP_007143097.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G043200.1 |
Entrez Gene | 18624847 |