PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G041800.1

Common Name

PHAVU_007G041800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HB-PHD

Protein Properties

Length: 827aa MW: 90606 Da PI: 4.8795

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G041800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.7	1.7e-12	692	737	11	56
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +e+L F++n+yp+++++e LA++lgLt +qV WF N R + Phvul.007G041800.1 692 VVERLHISFKENQYPDRTTKESLAQELGLTCQQVAKWFDNTRWSFR 737 57889999**********************************8766 PP
2	PHD	36.9	8.3e-13	340	395	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C++ ++++++lCdg C++ fH+ Cl+++l +e++p g wlC+ C++k Phvul.007G041800.1 340 FCAKCHSkeLSSNNDIILCDGvCDRGFHQLCLDPPLLTEDIPPGdeGWLCPGCDCK 395 69999977777*****77****************9999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	2.66E-13	330	398	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.3E-12	337	394	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.754	338	395	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	3.66E-29	340	392	No hit	No description
Pfam	PF00628	2.7E-10	340	395	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	1.2E-9	340	393	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	341	392	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	1.4E-13	671	733	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-12	678	742	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.102	679	739	IPR001356	Homeobox domain
SMART	SM00389	4.7E-12	681	743	IPR001356	Homeobox domain
Pfam	PF00046	5.0E-10	692	737	IPR001356	Homeobox domain
CDD	cd00086	6.11E-12	693	740	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence Send to blast
MTSPIGELTS SSNGTAGGMS TEQSGLSEKT QLGTEHLLKE QRESGTVLTS SVMDEKSNQV 60 SANATENSVI LLPAPPQHDL EKNCQTVEGS HLQQSTDKEV SLQLSNDEPE NPSQPLSENE 120 PVESAPAFAG DGQKQSSPAL ANTSYVNNML DPPSGDAVIN CSEKVSNSPA NSQLRRKGKK 180 NSKFLKKTYM LRSVGSSDRA LRSKTKENPK TPEPNSNLVD CNNNNNNDGV KKKSFKKKRK 240 SGEVGITDQF SRIKSHLRYL LNRIGYEKNL IDAYSAEGWK GYSMEKLKPE KELQRAKSEI 300 IRRKLNIREL FRNLDSLCTE GKLPESLFDS EGEIDSEDIF CAKCHSKELS SNNDIILCDG 360 VCDRGFHQLC LDPPLLTEDI PPGDEGWLCP GCDCKDDCMD LINDSFGTSL SISDTWERVF 420 PEAAAAAGNK TDNNSGLPSD DSDDDDYNPN GPEDVKVEGD ESSSDESDYA SASENLEGSH 480 GDQYLGLPSD DSDDGDYDPA APDADSKVNV ESSSSDFTSD SDDLPAAIVE NTSPGQDGEI 540 RSASLDDVKC LNSYGKRKGK AGKKLSMADE LSSLLEPDSG QEGSTPVSGR RNLERLDYKK 600 LYDEAYHSDT SEDEDWTATV TPSRKKKGNA TPVSPDGNAS NNSMHTPKRN GHQKKFENTK 660 NSPAKSLDDH VKSDSRKQKS KSSAYKRLGE AVVERLHISF KENQYPDRTT KESLAQELGL 720 TCQQVAKWFD NTRWSFRHSS QMETNSGRNT LQQSTDSRAE NEGGECELRS PEVSGEISKA 780 PSSGKRKHLS EHQLSETQLD INGLATSSPN AHQTQMGKKM KTRRRK*

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence Send to blast

MTSPIGELTS SSNGTAGGMS TEQSGLSEKT QLGTEHLLKE QRESGTVLTS SVMDEKSNQV  60
SANATENSVI LLPAPPQHDL EKNCQTVEGS HLQQSTDKEV SLQLSNDEPE NPSQPLSENE  120
PVESAPAFAG DGQKQSSPAL ANTSYVNNML DPPSGDAVIN CSEKVSNSPA NSQLRRKGKK  180
NSKFLKKTYM LRSVGSSDRA LRSKTKENPK TPEPNSNLVD CNNNNNNDGV KKKSFKKKRK  240
SGEVGITDQF SRIKSHLRYL LNRIGYEKNL IDAYSAEGWK GYSMEKLKPE KELQRAKSEI  300
IRRKLNIREL FRNLDSLCTE GKLPESLFDS EGEIDSEDIF CAKCHSKELS SNNDIILCDG  360
VCDRGFHQLC LDPPLLTEDI PPGDEGWLCP GCDCKDDCMD LINDSFGTSL SISDTWERVF  420
PEAAAAAGNK TDNNSGLPSD DSDDDDYNPN GPEDVKVEGD ESSSDESDYA SASENLEGSH  480
GDQYLGLPSD DSDDGDYDPA APDADSKVNV ESSSSDFTSD SDDLPAAIVE NTSPGQDGEI  540
RSASLDDVKC LNSYGKRKGK AGKKLSMADE LSSLLEPDSG QEGSTPVSGR RNLERLDYKK  600
LYDEAYHSDT SEDEDWTATV TPSRKKKGNA TPVSPDGNAS NNSMHTPKRN GHQKKFENTK  660
NSPAKSLDDH VKSDSRKQKS KSSAYKRLGE AVVERLHISF KENQYPDRTT KESLAQELGL  720
TCQQVAKWFD NTRWSFRHSS QMETNSGRNT LQQSTDSRAE NEGGECELRS PEVSGEISKA  780
PSSGKRKHLS EHQLSETQLD INGLATSSPN AHQTQMGKKM KTRRRK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G041800.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007143079.1	0.0	hypothetical protein PHAVU_007G041800g
TrEMBL	V7BDS7	0.0	V7BDS7_PHAVU; Uncharacterized protein
STRING	XP_007143079.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8437	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	1e-95	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	Phvul.007G041800.1
Entrez Gene	18624832