PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G027200.1
Common NamePHAVU_007G027200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CO-like
Protein Properties Length: 410aa    MW: 45980.3 Da    PI: 5.207
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G027200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.72.6e-091659340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ +  k+++++C  ++ +lC+ C ++ H+       H++v
  Phvul.007G027200.1 16 ARACDSCITKRARWYCAADDAFLCQACDSSVHSAnplarrHERV 59
                        578*****************************667888888876 PP
2CCT68.12.3e-23354397144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Phvul.007G027200.1 354 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 397
                         9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9071461IPR000315B-box-type zinc finger
SMARTSM003362.9E-101461IPR000315B-box-type zinc finger
PfamPF006435.8E-81659IPR000315B-box-type zinc finger
CDDcd000211.16E-81761No hitNo description
PROSITE profilePS5101716.083354396IPR010402CCT domain
PfamPF062036.7E-18354396IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSTAKNAAIA VGGKTARACD SCITKRARWY CAADDAFLCQ ACDSSVHSAN PLARRHERVR  60
LKTASYKSTD EQQQQPPTWH TKKARTPRHG KHSRSSNPFH LVPEVGSEEV NSNEENEEQL  120
LYRVPIFDPF LAELCGTNSS SPSSVTSTDQ GAAAAVAEGE NKGVQSNFFY QSNNEMENLH  180
GMLPSDAELA EFAADVESLL GRGLENECVG MEDLGLIDAK EEECSEGSGK VKVEEESPEM  240
EMEMVGRDVS FELSFDYETC EEVKENVCDL EFGKEEEKEE EMMKKKKISL QLDYESVITA  300
WASQKSPWTT PHKPNLDPDE CWHHCMESCG TGMDDPYGEV GGFGIHPMIN DGGREARVSR  360
YREKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRASFA PPTFPLLNH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1364380RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G027200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142909.10.0hypothetical protein PHAVU_007G027200g
SwissprotQ8RWD01e-103COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLV7BDC50.0V7BDC5_PHAVU; Uncharacterized protein
STRINGXP_007142909.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.19e-96B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]