PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.007G027000.1 | ||||||||
Common Name | PHAVU_007G027000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 354aa MW: 39102.1 Da PI: 4.3023 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.2 | 2e-18 | 118 | 166 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 +y+GVr++k +g+W+AeIrd + + +r++lg+f taeeA +a++a r+++e Phvul.007G027000.1 118 KYRGVRQRK-WGKWAAEIRDpF-----QsTRIWLGTFNTAEEASEAYEARRLEFE 166 8*******9.**********55.....45*******************9999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.7E-12 | 118 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-16 | 118 | 165 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.53E-17 | 118 | 150 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.6E-22 | 118 | 166 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.0E-17 | 118 | 181 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.836 | 118 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 354 aa Download sequence Send to blast |
MPESRKQPAS KPKQKPCHSL QESKSMRKLR IVYDDPDATD SSDDESEWMQ KQKKTKRSLC 60 EIPLPPLPQT FTSPETTSFE VNSNINAVRV KVCIEGQPQS RKRVLTQTPS ARRNTSGKYR 120 GVRQRKWGKW AAEIRDPFQS TRIWLGTFNT AEEASEAYEA RRLEFEAMAK ARAYKNVSEP 180 LPTTSDKSIC CNSSDAAAAV SVSEKFSTTF DDSDSVLSHP SPSSVLELDS SASKPIDKGN 240 LSNEEAAEAN DLVAELAELE IPDLSLLNSP SPFDRATAAA LPSGTEPDFG LDFDFVSFED 300 YGQGFDDFGG LEDINIYGFD DNEPSELPDF DFGDFCADEF AGWTEEPLNI PCA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-12 | 116 | 159 | 12 | 56 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00217 | DAP | Transfer from AT1G68550 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.007G027000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007142907.1 | 0.0 | hypothetical protein PHAVU_007G027000g | ||||
TrEMBL | V7BEJ9 | 0.0 | V7BEJ9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007142907.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68550.2 | 2e-16 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.007G027000.1 |
Entrez Gene | 18624680 |