PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G019000.1
Common NamePHAVU_007G019000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 405aa    MW: 45952.7 Da    PI: 5.2571
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G019000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-13166210655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++Er+RR+++N+++ +Lr+l+P  +      Kl+ a+iL  A+eY+k+Lq
  Phvul.007G019000.1 166 LMAERKRRKKLNDRLYKLRSLVPRiS------KLDRASILGDAIEYVKDLQ 210
                         589*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.87E-14159214No hitNo description
PROSITE profilePS5088816.075160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-18162222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-11165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-16166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17166223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.704304376IPR002912ACT domain
CDDcd048733.33E-4305368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
KKNILQETMG TQVLISAPGG LVELFVTKQV HEDHEVIDFV TNQCIEAVNH SMSYIENLQP  60
NPLLGDENEG NNSRNTHFHP SEHVITMCSS PLNLMQQFNY NQQNRVKSDG FSEESLEAKE  120
KQQQEEEKEL VKGRSDSMSD CSEQNEEEEE GKYRRRNGKG NQSKNLMAER KRRKKLNDRL  180
YKLRSLVPRI SKLDRASILG DAIEYVKDLQ KQVKELQDEL EENADTESNC INGNNDNNNN  240
QYVGVGELCP NHEHAKSQSG LHVGTSGNGY VSKQKQEDAA LIDKQTQQME PQVEVALIDG  300
NEYFVKVFCE HRPGGFVRLM ESFNTIGMDV VHATVTSHKG LVSNVFEVEK KDSESVEAED  360
VRESLLELTR NRYRGWSHEV TANSENGVGR DQHQIAAYPH HFHT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153174RRRNGKGNQSKNLMAERKRRKK
2168175ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G019000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-168AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142813.10.0hypothetical protein PHAVU_007G019000g, partial
TrEMBLV7BA990.0V7BA99_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007142813.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-84bHLH family protein