PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.007G015000.1 | ||||||||
Common Name | PHAVU_007G015000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | TCP | ||||||||
Protein Properties | Length: 253aa MW: 26806 Da PI: 10.5887 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.6 | 5.3e-39 | 28 | 120 | 2 | 92 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...k 89 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ a+ns s + Phvul.007G015000.1 28 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-SVSLSVRAANSASLsspS 117 78*******************************************************************777.222222222111111111 PP TCP 90 aak 92 +a+ Phvul.007G015000.1 118 SAS 120 111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-33 | 34 | 126 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 34 | 88 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MSTSDGTTNG VTNASIIDQQ RHQPQPLAVK KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTTPASFSS VSLSVRAANS ASLSSPSSAS 120 DHKPQLLAPT PFILGKRIRT DDESSKDDAV SVGPSLVGPS TPSGLWALPT RPDFGQIWSF 180 AAAAPEMVVH PPAVSVSQQQ VSLFAHHQRQ QQQAIGEASA ARVGNYLPGH LNLLASLSGG 240 HGNSGRRDDE HR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.007G015000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007142764.1 | 0.0 | hypothetical protein PHAVU_007G015000g | ||||
Swissprot | Q9FMX2 | 1e-94 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | V7BCY6 | 0.0 | V7BCY6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007142764.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-81 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.007G015000.1 |
Entrez Gene | 18624557 |