PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G002700.1
Common NamePHAVU_007G002700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C3H
Protein Properties Length: 299aa    MW: 31581.7 Da    PI: 9.6166
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G002700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.31.4e-09102127227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+lC+ f     Ck+Gd+C+FaHg+
  Phvul.007G002700.1 102 KTRLCNKFNTAEGCKFGDKCHFAHGE 127
                         8***********************96 PP
2zf-CCCH32.61.3e-10265289126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC +f + G C +G+rC+FaHg
  Phvul.007G002700.1 265 FKTKLCGNFTK-GSCTFGERCHFAHG 289
                         69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.84259No hitNo description
Gene3DG3DSA:4.10.1000.101.5E-1498131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-898131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206101128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0074102127IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6102127IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.94E-15162242IPR004088K Homology domain, type 1
SMARTSM003228.2E-9171241IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.5E-14172240IPR004088K Homology domain, type 1
PROSITE profilePS5008413.754172236IPR004088K Homology domain, type 1
PfamPF000138.9E-10174238IPR004088K Homology domain, type 1
CDDcd001052.73E-12176237No hitNo description
Gene3DG3DSA:4.10.1000.106.1E-15261295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8263294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.995264291IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-6264290IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8265289IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDHRKRGRSE ATFNVNGGAK KFRPETDSFP TGLGSKSKPC TKFFSTSGCP FGEGCHFLHY  60
VPGGFKAVSQ LINVGSDPAI PHAGRNPILP SFPDGSSPPV VKTRLCNKFN TAEGCKFGDK  120
CHFAHGEWEL GRPTAPSYED PRVMGQMPNS RIGGRGEPPF PGHGAAASFG ASATAKISIN  180
ASLAGAVIGK SGVNSKQICR VTGAKLAVRD HDTDSNLRNI ELEGSLDQIK QASAMVHELI  240
LNISAASGPP IKSFSTQNSA PTSNFKTKLC GNFTKGSCTF GERCHFAHGT DDLRKTGM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G002700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142616.10.0hypothetical protein PHAVU_007G002700g
SwissprotQ7F8R01e-114C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLV7BAK00.0V7BAK0_PHAVU; Uncharacterized protein
STRINGXP_007142616.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-50C3H family protein