PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.007G000400.1

Common Name

PHAVU_007G000400g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Trihelix

Protein Properties

Length: 357aa MW: 39649.6 Da PI: 7.4548

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.007G000400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	92.3	5e-29	39	133	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rWt+qe+l+Li+++r+ e+++rrg+ + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykki+e+e++ +++s s +++ Phvul.007G000400.1 39 RWTRQEILVLIQGKRDAENKFRRGRtaglplgsgQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIREWESQLREDSDSFWVMR 129 8********************97778888888********************************************99999999999 PP trihelix 83 dqle 86 ++l+ Phvul.007G000400.1 130 NDLR 133 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	7.21E-14	38	112	No hit	No description
PROSITE profile	PS50090	6.562	39	105	IPR017877	Myb-like domain
Pfam	PF13837	4.6E-13	39	128	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.4E-5	39	104	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MALEQELSLG QSRNPNPVDG VDVRGEGGDE GGKAPRLPRW TRQEILVLIQ GKRDAENKFR 60 RGRTAGLPLG SGQVEPKWAS VSSYCRKHGV NRGPVQCRKR WSNLAGDYKK IREWESQLRE 120 DSDSFWVMRN DLRRDRKLPG FFDKEVYDIL DSGSQAPPPL PLALPSPPSI TVTVCKDMDM 180 DSKRGSAPAP SPAPADPAEP HLYDSNRSVP VEDGLFSDFE QDEFSASPEK KDILPPSNRD 240 FPAPIPLSEK QYQPLLRGCQ GEGVTNEKRR TPNPEMGSSS QGERKRKRLA SDGGEESLQI 300 HLIDVLERNG KMLSAQLEAQ NINFQLDREQ RKVHGSNLVA VLDKLADALG RIADKL*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MALEQELSLG QSRNPNPVDG VDVRGEGGDE GGKAPRLPRW TRQEILVLIQ GKRDAENKFR  60
RGRTAGLPLG SGQVEPKWAS VSSYCRKHGV NRGPVQCRKR WSNLAGDYKK IREWESQLRE  120
DSDSFWVMRN DLRRDRKLPG FFDKEVYDIL DSGSQAPPPL PLALPSPPSI TVTVCKDMDM  180
DSKRGSAPAP SPAPADPAEP HLYDSNRSVP VEDGLFSDFE QDEFSASPEK KDILPPSNRD  240
FPAPIPLSEK QYQPLLRGCQ GEGVTNEKRR TPNPEMGSSS QGERKRKRLA SDGGEESLQI  300
HLIDVLERNG KMLSAQLEAQ NINFQLDREQ RKVHGSNLVA VLDKLADALG RIADKL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	267	287	KRRTPNPEMGSSSQGERKRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.007G000400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007142589.1	0.0	hypothetical protein PHAVU_007G000400g
Swissprot	Q8VZ20	1e-108	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	V7BCH4	0.0	V7BCH4_PHAVU; Uncharacterized protein
STRING	XP_007142589.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2165	33	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-74	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Phvul.007G000400.1
Entrez Gene	18624427

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]