PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G221500.1
Common NamePHAVU_006G221500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 665aa    MW: 74031.3 Da    PI: 6.2124
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G221500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.3e-22118218198
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++ +++a+++       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F  
  Phvul.006G221500.1 118 FCKTLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL- 205
                         99****************************975444444..8************************************************. PP

                         -SSSEE..EEEEE- CS
                  B3  85 dgrsefelvvkvfr 98 
                          + +++el+v+v+r
  Phvul.006G221500.1 206 -RGENGELRVGVRR 218
                         .449999*****97 PP
2Auxin_resp112.54e-37244326183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha++t++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+++++err+sGt+vgv d +++ W+nS+WrsLk
  Phvul.006G221500.1 244 ASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSSVWTNSEWRSLK 326
                         789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-44107247IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-41114233IPR015300DNA-binding pseudobarrel domain
CDDcd100177.25E-21116218No hitNo description
PROSITE profilePS5086311.251118220IPR003340B3 DNA binding domain
SMARTSM010191.2E-21118220IPR003340B3 DNA binding domain
PfamPF023624.2E-20118218IPR003340B3 DNA binding domain
PfamPF065073.3E-35244326IPR010525Auxin response factor
PfamPF023091.5E-11537630IPR033389AUX/IAA domain
PROSITE profilePS5174527.084540633IPR000270PB1 domain
SuperFamilySSF542774.71E-11542617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MASAAPGATN DALYKELWHA CAGPLVTLPR EGERVYYFPQ GHMEQLEASM NQGLEQQMPS  60
FNLPSKILCK VVNVHLRAEP ETDEVYAQIT LLPEADQSEV TSPDDPLPEP PRCTVHSFCK  120
TLTASDTSTH GGFSVLRRHA DDCLPPLDMT QQPPWQELVA TDLHGNEWHF RHIFRGQPRR  180
HLLTTGWSVF VSSKKLVAGD AFIFLRGENG ELRVGVRRLM RQQSNMPSSV ISSHSMHLGV  240
LATASHAIAT GTLFSVFYKP RTSRSEFIVS VNKYLEAQSH KLSVGMRFKM RFEGDEVPER  300
RFSGTIVGVG DNKSSVWTNS EWRSLKVQWD EPSSILRPDR VSPWELEPLV STPPTNSQPS  360
QRNKRSRPHV LPSTMPDSSM QGVRKSPVDS APFSYRDHQH GRDIYPPAKF NSTATGFLGF  420
GGNCSASNKS IFWSSRTENS TESFSPVALK ESGEKRQGAA NGCRLFGIQL LDNCNGEESL  480
PMVNLSGRVG DDGPLPSLDA ESDQHSEPSN INRYDIPSVS CDAEKSCLRS PQESQSRQIR  540
SCTKVHMQGM AVGRAVDLTR FDGYEDLLRK LEEMFDIKDE LCGSTKKWQV VYTDNEDDMM  600
MVGDDPWLEF CSIVRKIFIY TAEEVKKLSP KIGLPINEEV KPSKMDSEAV VNPDDQSSIV  660
GSGC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.0735113357Auxin response factor 1
4ldw_A0.0735113357Auxin response factor 1
4ldw_B0.0735113357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G221500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148592.10.0hypothetical protein PHAVU_006G221500g
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLV7BVJ50.0V7BVJ5_PHAVU; Auxin response factor
STRINGXP_007148592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68022638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]