PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G205800.1
Common NamePHAVU_006G205800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 808aa    MW: 90441.8 Da    PI: 5.1784
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G205800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-05346369123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++C +C++sF  k+++ rH+ + H
  Phvul.006G205800.1 346 FECRKCNMSFDEKDSYLRHLLSvH 369
                         89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.56E-6218266IPR016177DNA-binding domain
SuperFamilySSF576676.11E-5345415No hitNo description
PROSITE profilePS501579.577346374IPR007087Zinc finger, C2H2
SMARTSM003550.0093346369IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280348369IPR007087Zinc finger, C2H2
SMARTSM003550.37393415IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.642393420IPR007087Zinc finger, C2H2
PROSITE patternPS000280395415IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MEDAALKLES LACIDSTTLS HSELLALSLS SLCTFDLRAT NHLVTPKIDP ALFNESAGSR  60
RQTYSRPQSS PTGRRRRLAG LLPAPKLPPL PAHDPENAEN RLIIDYLKQL IREDPKFDQV  120
HLAPPSLPQP TVKRKRGRKP KLKHHLEHCY RGIDVLNRNG VAVDLSQLAT SQDPFAYELK  180
RRTEGLSNEE ELLGFLRDLP GQWGSRRKKR RIVDAADFGD VLPLSWKILL GLKRKDGRAW  240
IYCRRYISPS GQHFVSCKEV SSYLQSLLGN GDAQPQSSRR SENVVQEQIV PAENSAGVTP  300
ERQDQRQIIA VNTEVPGLFA AANERVKEVA LLGIENLADV QIHDLFECRK CNMSFDEKDS  360
YLRHLLSVHQ RTTRRYRLGS SVGDGVIIKD GKFECQFCHK VFLERRRYNG HVGIHVRNYV  420
RRVEDSPGQI NVQRTDDKSP VREDVPLRIS KMDALIEIAQ NSIMEGSVTE PHHLAKLNEI  480
PASDIAVGCL DHHGKESPIS EKQMEDSLTR KNVDHHNMDG KVEEIDDDNH VIDVKMVTFL  540
DNMSLLSVNM QDVKASETSD AKDDVELTIE DLDQSGIDLD GVTEVRLLPL SELNMIPESE  600
KSENSGCSNT RVQFKLDEDI SNKSELEFGN CLKDVPVTVS TNVQEMGMTA SEENVLHSRA  660
FNSSISTEQS LDCLPAFSSD KGGKQFCSLD NEYDNVKGLQ ELRFDEIDNV DYDFARVQDS  720
PSLPAVSTEL ANIRVMEETY ASSVQFESQE GMLNIGGRDQ LTTVCVWCGI EFNHEAVNSE  780
IQPDSVGFMC PACKAKISGQ INVLDCE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G205800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148405.10.0hypothetical protein PHAVU_006G205800g
TrEMBLV7BR060.0V7BR06_PHAVU; Uncharacterized protein
STRINGXP_007148405.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58101719