PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G179700.1
Common NamePHAVU_006G179700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 264aa    MW: 29608.1 Da    PI: 5.1603
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G179700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.3e-20121171255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd s+   + +r++lg+f+taeeAa a+++a+++++g
  Phvul.006G179700.1 121 HYRGVRRRP-WGKYAAEIRDSSK---KgARVWLGTFDTAEEAALAYDKAALRIRG 171
                         8********.**********543...34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-32120180IPR001471AP2/ERF domain
CDDcd000184.54E-31120179No hitNo description
SMARTSM003803.4E-38121185IPR001471AP2/ERF domain
PfamPF008475.0E-15121171IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-24121180IPR016177DNA-binding domain
PROSITE profilePS5103224.065121179IPR001471AP2/ERF domain
PRINTSPR003672.4E-11122133IPR001471AP2/ERF domain
PRINTSPR003672.4E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDNHSNHVAT SEGILENVWA KIMSSDKADG RKGDAAESSN SWEELPNLDG REGSMEILQR  60
LPSLGRWISM GADFWEEVLD GIALPNTSNT EYSSNNNMES GGECDSKVED AVRIEKEVTK  120
HYRGVRRRPW GKYAAEIRDS SKKGARVWLG TFDTAEEAAL AYDKAALRIR GPKAYLNFPL  180
ERVAKALGCD SKGTHLTCRS IGNREKMINS RRRGSREREV FDDDMMNEEP ARKKLECMVE  240
NEIGVFVFQD LGKDYLDSLL SSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-29120180464ATERF1
3gcc_A6e-29120180464ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G179700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148087.10.0hypothetical protein PHAVU_006G179700g
TrEMBLV7BU410.0V7BU41_PHAVU; Uncharacterized protein
STRINGXP_007148087.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-36ERF family protein