PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G176000.1
Common NamePHAVU_006G176000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 302aa    MW: 34015.8 Da    PI: 4.8912
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G176000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.35.6e-1521112187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+++   +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++ ++ + + ss++p++++l+
  Phvul.006G176000.1  21 CWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGTLSSSWPFYERLD 111
                         7****************************************99999****************************99999999*******98 PP

            trihelix  87 a 87 
                         a
  Phvul.006G176000.1 112 A 112
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2519113No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MPDFNDSIAP PSRPVPVRED CWSEEASSTL VDAWGRRYLE LNRGNLRQKD WQDVADAVNA  60
LHGHTKKTHR TDVQCKNRID TIKKKYKIEK ARVSSSNGTL SSSWPFYERL DALIGPNFNA  120
KKPPSSSPSP SPPVALPLLP HRKNLSSSPA IAVTPTAVAL PQKRSAAAAA MDEGYFRRNY  180
SAVAAAAAAA EADEEEEEEE EEEADDVEEE EEEDEGRGSE VEEGEKEREG MRRLAKAIER  240
FGEVYERVEG QKLRQMVDLE KQRMQFAKDL EVQRMQMFMD TQVQLERIKR GKRSGSNDMY  300
S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G176000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148047.10.0hypothetical protein PHAVU_006G176000g
TrEMBLV7BTZ90.0V7BTZ9_PHAVU; Uncharacterized protein
STRINGXP_007148047.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-42sequence-specific DNA binding transcription factors