PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G175300.1 | ||||||||
Common Name | PHAVU_006G175300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 365aa MW: 41382.2 Da PI: 8.3541 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.7 | 9.8e-32 | 89 | 142 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++F++ave+LGG+e+AtPk +l+lm+v+gL+++hvkSHLQ+YR+ Phvul.006G175300.1 89 PRLRWTPELHHSFMHAVERLGGQERATPKLVLQLMNVEGLSIAHVKSHLQMYRS 142 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-30 | 85 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.219 | 85 | 145 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.66E-15 | 87 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-22 | 89 | 144 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.9E-9 | 90 | 141 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MSEGHEIHSN EEASSGCSQK CSSFDLNTEA CSDDNTNGST EEGYELTTDE NNIEKVKDEG 60 TSANNGSSIS REGNERRGTV RQYVRSKMPR LRWTPELHHS FMHAVERLGG QERATPKLVL 120 QLMNVEGLSI AHVKSHLQMY RSKKLDEVGQ VLSQRSNQRV RSVMLHQSMS PQQHLKMGNG 180 GIILATQFDK HCHFPSLMQT PFPLSRSHAN DTNSRHQQWY INHQHFRKPI ASGQIQPKDT 240 PTRPSQLLDE KRWLPLEIIN NHQSKFQKLP AIVAPKTGSH AVQPTEWSFV NNTSVTEYIS 300 NKPNEPRNYS SSLKLEFDPP FRIKKDEQQL PDLQLSLSYT VASDGGKMNH YRETQEISTK 360 LSLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-18 | 90 | 144 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-18 | 90 | 144 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-18 | 90 | 144 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-18 | 90 | 144 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-18 | 90 | 144 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-18 | 90 | 144 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-18 | 90 | 144 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-18 | 90 | 144 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G175300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 1e-119 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148039.1 | 0.0 | hypothetical protein PHAVU_006G175300g | ||||
Refseq | XP_007148040.1 | 0.0 | hypothetical protein PHAVU_006G175300g | ||||
TrEMBL | V7BSN7 | 0.0 | V7BSN7_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148039.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3012 | 32 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-35 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G175300.1 |
Entrez Gene | 18629119 |