PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G173500.1 | ||||||||
Common Name | PHAVU_006G173500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | ERF | ||||||||
Protein Properties | Length: 354aa MW: 38026.3 Da PI: 5.3894 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.3e-18 | 21 | 71 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d ++ r +lg+f+tae+Aa+a+++a+++l+g+ Phvul.006G173500.1 21 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDNAARALRGA 71 689******.7*********....4456*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.9E-35 | 21 | 84 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-12 | 21 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.495 | 21 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.12E-31 | 21 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.0E-29 | 21 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-20 | 22 | 78 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-7 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 44 | 60 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGAMNDGNRS RKKSSSRGHH RFVGVRQRPS GRWVAEIKDS LQKVRLWLGT FDTAEDAARA 60 YDNAARALRG ANARTNFELP EATSGDASKR GDGGGSTFVP DCSEPFSFED VNEPGEEAEG 120 LLGALKAKLF DGKKGKFHFP FLTNSAASPV VHSGLVSRST QNICSAEKGL LLPSSPNKTV 180 LSSMNGTGAN PLLGVTSTLA TSNTCANSVV IPNHDHEGSV ARSFRVDTHQ LCQTPPDATW 240 FNEVAYELPW PTQFMSQVPD NSSLIASAGT LAWPLSGVTE STIDMACPDQ GSSSSNKSGQ 300 MMNMVNMQLP LVGDATEGIW TLEQQQFVQC ENNSWFSYNG SWDPLLYIPS ELA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 19 | 77 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G173500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148016.1 | 0.0 | hypothetical protein PHAVU_006G173500g | ||||
TrEMBL | V7BSI8 | 0.0 | V7BSI8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148016.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11333 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-13 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G173500.1 |
Entrez Gene | 18629100 |