PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G169600.1
Common NamePHAVU_006G169600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 27691.3 Da    PI: 10.0586
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G169600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312877150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Phvul.006G169600.1 28 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 77
                        79***********************************************8 PP
2K-box117.79.8e-39981927100
               K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            ++ea+a+ +qqe++kL+++i+n+q+++R+++Ge+L+s++ k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+
  Phvul.006G169600.1  98 AGsASEANAQFYQQEADKLRAQISNMQNNNRQMMGESLGSMTAKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRA 188
                         444899************************************************************************************* PP

               K-box  97 klee 100
                         k++e
  Phvul.006G169600.1 189 KIAE 192
                         *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006634.1322080IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-422079IPR002100Transcription factor, MADS-box
CDDcd002659.27E-452190No hitNo description
SuperFamilySSF554554.32E-332192IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-332242IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002276IPR002100Transcription factor, MADS-box
PfamPF003199.1E-272976IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-334257IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-335778IPR002100Transcription factor, MADS-box
PfamPF014866.3E-28103190IPR002487Transcription factor, K-box
PROSITE profilePS5129715.144106196IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
QVANMAFPNP SMSVSPQRKM GRGKIEIKRI ENTTNRQVTF CKRRNGLLKK AYELSVLCDA  60
EVALIVFSSR GRLYEYANNS VKATIERYKK ACSDSSGAGS ASEANAQFYQ QEADKLRAQI  120
SNMQNNNRQM MGESLGSMTA KDLKNLESKL EKGISRIRSK KNELLFAEIE YMQKREIDLH  180
NNNQLLRAKI AESERSQNMG VLAGGTSYES MQSQQAFDSR GYFQVTGLQP NNQYARQDQM  240
SLQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-212088169Myocyte-specific enhancer factor 2B
1tqe_Q3e-212088169Myocyte-specific enhancer factor 2B
1tqe_R3e-212088169Myocyte-specific enhancer factor 2B
1tqe_S3e-212088169Myocyte-specific enhancer factor 2B
6c9l_A3e-212088169Myocyte-specific enhancer factor 2B
6c9l_B3e-212088169Myocyte-specific enhancer factor 2B
6c9l_C3e-212088169Myocyte-specific enhancer factor 2B
6c9l_D3e-212088169Myocyte-specific enhancer factor 2B
6c9l_E3e-212088169Myocyte-specific enhancer factor 2B
6c9l_F3e-212088169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G169600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3828330.0AY382833.1 Glycine max MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147970.10.0hypothetical protein PHAVU_006G169600g, partial
SwissprotQ408851e-135AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLV7BPR31e-180V7BPR3_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007147970.11e-180(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-114MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]