PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G163100.1
Common NamePHAVU_006G163100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 317aa    MW: 34649.2 Da    PI: 6.502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G163100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-174896355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr+++ +gr++AeIr p +   + r++lg+f+taeeAa a+++a+++++g
  Phvul.006G163100.1 48 FLGVRRRP-WGRYAAEIRNPLT---KERHWLGTFDTAEEAALAYDRAALSMKG 96
                        56******.**********743...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.52147104IPR001471AP2/ERF domain
CDDcd000183.19E-2847103No hitNo description
SMARTSM003807.2E-3147110IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2048105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-2848104IPR001471AP2/ERF domain
PRINTSPR003674.3E-84859IPR001471AP2/ERF domain
PfamPF008472.8E-115096IPR001471AP2/ERF domain
PRINTSPR003674.3E-87086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MSTSRTSDVS LKGYESNPTQ MNLSLLQRNT STCGERRGRG KQAEPGRFLG VRRRPWGRYA  60
AEIRNPLTKE RHWLGTFDTA EEAALAYDRA ALSMKGCQAR TNFVYSKDTN IFHNALTPFN  120
AQPLLPPSHN THNNIQLTNQ SSLSHLATFT SHIQNPSDLY ADTALGSPQD DNFFFSSDSN  180
SGYLECIVPG NCFKKGNASA SGHVNSNSMQ VQPHFDTSEE ALNMQATVAL SYADTSCPSD  240
LGKGLWDNHQ SWDCSSNELA AMFKNPSRIV EEGCMDALHP FTDSSNYGLM SQVVSSTTYS  300
PSVPPFGNVG SGYSPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2138103571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G163100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147885.10.0hypothetical protein PHAVU_006G163100g
SwissprotQ6J9Q22e-52ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLV7BPI20.0V7BPI2_PHAVU; Uncharacterized protein
STRINGXP_007147885.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-38ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]