PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G152400.1

Common Name

PHAVU_006G152400g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

NF-YC

Protein Properties

Length: 230aa MW: 25240.1 Da PI: 4.38

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G152400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	139.4	9.6e-44	56	157	2	100
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 ++sfw++q ie++td+k h+lPlari+ki+k+dedvkm+s+ea +ll+kacelfi+elt+r+w + e+ krr ++k+di++a++ +d+f Phvul.006G152400.1 56 VNSFWARQlkeIEESTDLKSHSLPLARIRKIMKFDEDVKMVSTEATMLLAKACELFIMELTMRAWANVEDDKRRIIQKTDISSAISMSDVF 146 578*998889*************************************************************************** PP NF-YC 90 dflvdivprde 100 dflvd+vprd+ Phvul.006G152400.1 147 DFLVDTVPRDD 157 *******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.85E-28	33	149	IPR009072	Histone-fold
Pfam	PF00808	5.6E-19	77	140	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.3E-31	78	155	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MDQNQHGEAG GKGPAPAEEE APNTNPPTQT VGVTGGNRYD RQCMQQQQQE KMQQRVNSFW 60 ARQLKEIEES TDLKSHSLPL ARIRKIMKFD EDVKMVSTEA TMLLAKACEL FIMELTMRAW 120 ANVEDDKRRI IQKTDISSAI SMSDVFDFLV DTVPRDDTVT VGPQLLAGIA PTPNQNAPYP 180 YMSIPDQHVA GPPPPYAAPT NAPEDAANPS CSNSDPTPNE QDTSSSDDH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	9e-40	63	155	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G152400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007147756.1	1e-172	hypothetical protein PHAVU_006G152400g
Swissprot	Q8LCG7	2e-47	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	V7BRS7	1e-170	V7BRS7_PHAVU; Uncharacterized protein
STRING	XP_007147756.1	1e-171	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20696	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-43	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	Phvul.006G152400.1
Entrez Gene	18628886

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]