PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G149000.1
Common NamePHAVU_006G149000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family G2-like
Protein Properties Length: 301aa    MW: 33419.3 Da    PI: 8.7973
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G149000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.28.7e-3473126255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWtp+LH++Fv+av++LGG+++AtPk +l+lm+vkgLt++hvkSHLQ+YR+
  Phvul.006G149000.1  73 PRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQLMNVKGLTISHVKSHLQMYRS 126
                         8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.32569129IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-3369128IPR009057Homeodomain-like
SuperFamilySSF466892.69E-1671127IPR009057Homeodomain-like
TIGRFAMsTIGR015575.4E-2573127IPR006447Myb domain, plants
PfamPF002491.7E-974125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MKPQAAETDL CSLKRSPPST MSSSSSSLIT TLVDHNNNPP QQRPPRRRFA SHHLPEISLK  60
TPMVRPYVRS KMPRLRWTPD LHRCFVHAVQ RLGGEDRATP KLVLQLMNVK GLTISHVKSH  120
LQMYRSMKHE QMSQGANKND VAPEFPASTF STLGPRYAQQ NPHQRSRTED LVPIHAQWND  180
YEEGSYSGKQ GGKSIIGCNG NEETMHSYII FEGLLSDQTV EEDKMAPEKV SLGGATGYER  240
EHERFQDRST SAIGGGGGGE REGERTVSLS VSSRVNSHSF FNRSHTGPDA NDVSLELTLS  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1974129459Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1974129459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1974129459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1974129459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1974129459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1974129459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1974129459Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1974129459Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G149000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-108AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147718.10.0hypothetical protein PHAVU_006G149000g
TrEMBLV7BP260.0V7BP26_PHAVU; Uncharacterized protein
STRINGXP_007147718.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93812840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.18e-34G2-like family protein