PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G141700.1
Common NamePHAVU_006G141700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 554aa    MW: 61829.5 Da    PI: 6.0548
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G141700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.31.6e-1281815512374
                GRAS   2 velLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         +e+L +cA+avs++d e a  ++++ l +++s  gdp+qRl ay++e+L+arl +s+s +ykal++++ +   s++ +++++++ +++P+ 
  Phvul.006G141700.1 181 KEVLSRCAQAVSDDDIETAVGFMNKvLPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPA---SKDLMSYMHILCQICPYW 268
                         789******************997626788***************************************9...99999************* PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN  I ea+ +e+r+HiiDf+i qG+QW+ L+qaLasRp+gpp +R+Tgv+++es+  +   le +g+rL+++A+++gvpfef+ 
  Phvul.006G141700.1 269 KFAYVSANAVIGEAMLNESRIHIIDFQIAQGTQWMLLIQALASRPGGPPFIRVTGVDDSESFhaRGGGLEIVGKRLSDYATSCGVPFEFQS 359
                         **********************************************************9999889999*********************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a +  ++ele+L v+pgEalaVn+ + lh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n+++F++rf+e+++yysa+f+s+
  Phvul.006G141700.1 360 -AAMSGCEVELENLVVRPGEALAVNFPFILHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETFSYYSAMFESI 449
                         .89999************************************************************************************* PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ++ lp e+++ri+ E+++++r+ivn++aceg er+erhe ++kWr+r+++aGF p pls+++++ ++ +lr+++++ yr+e+++++l+lgW
  Phvul.006G141700.1 450 DVALPGEDKQRISAEQHCVARDIVNMIACEGPERVERHELFGKWRSRFSMAGFAPCPLSSSVTNAVRNMLREFNGN-YRLEHRDDALYLGW 539
                         **************************************************************************77.************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+r++ + SaWr
  Phvul.006G141700.1 540 KRRAMCTSSAWR 551
                         ***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.612154532IPR005202Transcription factor GRAS
PfamPF035145.7E-126181551IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MQTSQKHPTS SGIHLYHQPV QDIDSYTRYQ VLQSNSCHEI HDSSSQGTTI SFEPSKEQYF  60
TLESSPQIND LIGCDSPSYA SVSSNSNRSP FSPHASHSYH SDQHQSSDNN YGSPTSANSS  120
ADESYELKHK LRELEISLLG PDSDIVDSCQ CCYKGSHHGA SPMAKYNWDQ IVDMIPKLDL  180
KEVLSRCAQA VSDDDIETAV GFMNKVLPKM VSVGGDPIQR LGAYMLEGLR ARLESSGSLI  240
YKALKCEQPA SKDLMSYMHI LCQICPYWKF AYVSANAVIG EAMLNESRIH IIDFQIAQGT  300
QWMLLIQALA SRPGGPPFIR VTGVDDSESF HARGGGLEIV GKRLSDYATS CGVPFEFQSA  360
AMSGCEVELE NLVVRPGEAL AVNFPFILHH MPDESVSTEN HRDRLLRLVK SLSPKVVTLV  420
EQESNTNTSP FFQRFVETFS YYSAMFESID VALPGEDKQR ISAEQHCVAR DIVNMIACEG  480
PERVERHELF GKWRSRFSMA GFAPCPLSSS VTNAVRNMLR EFNGNYRLEH RDDALYLGWK  540
RRAMCTSSAW RCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6118655025378Protein SCARECROW
5b3h_A3e-6118655024377Protein SCARECROW
5b3h_D3e-6118655024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G141700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147638.10.0hypothetical protein PHAVU_006G141700g
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLV7BNT20.0V7BNT2_PHAVU; Uncharacterized protein
STRINGXP_007147638.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13