PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G134800.1

Common Name

PHAVU_006G134800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

G2-like

Protein Properties

Length: 314aa MW: 34227.9 Da PI: 7.3757

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G134800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	42	96	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl Phvul.006G134800.1 42 KPRLRWTQDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 96 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.569	39	99	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.5E-32	39	97	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.27E-16	42	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.7E-24	42	97	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-7	44	95	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-15	137	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MYPRLIHPHD GIVAQDDMQA AASNLSHSHK GDPCLVLTAD PKPRLRWTQD LHERFVDAVT 60 QLGGASKATP KAIMRTMNVK GLTLFHLKSH LQKYRLGKQS GKDLGEGCKD GSYLLESPGT 120 ENTSPKLPTS DTNEGYEIKE ALRAQMEVQS KLHLQVEAEK HLQIRQDAER RYMAMLERAC 180 KMLADQFIGA TVIDTDSQKF QAIGSKTPRG TLVDPLGFYS LPSAEVAGVN VPDEEIPHSL 240 PPQRADCSTE SCLTSHESSG GLTLEGSPGG GKRRMLGMDS MAAPLIWSEA KMRTQAINVA 300 QGSHPQGITR YGM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	42	98	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-18	42	98	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G134800.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093650	0.0	BT093650.1 Soybean clone JCVI-FLGm-24E4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007147561.1	0.0	hypothetical protein PHAVU_006G134800g
Swissprot	Q94A57	1e-63	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	V7BR79	0.0	V7BR79_PHAVU; Uncharacterized protein
STRING	XP_007147561.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	3e-65	G2-like family protein

Link Out ? help Back to Top
Phytozome	Phvul.006G134800.1
Entrez Gene	18628707

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]