PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G134700.1

Common Name

PHR1

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

G2-like

Protein Properties

Length: 328aa MW: 35556.6 Da PI: 6.7557

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G134700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.7e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Phvul.006G134700.1 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.813	46	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-32	48	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.14E-18	48	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-25	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	136	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MYHSKNVPSA SLVGGNSLVH GQHIDCGGSA MDHGNGGNSH SNNSNLNSKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDEGKKADK 120 KETGDVLSNL DGSSGMQITE ALKLQMEVQK RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ 180 QRLSGVLSEA PDTGVVAVVP GDVCQEPDTD PSTPDPEKAA KDRVPAKSLS GESFSSHHEP 240 LTPDSGCHGG SPADSPKGER STKKQRLNMD GSYSKQDMVL PLQILESSMS SYQHPNTVFL 300 GQEQFDPSMG MSSRSGEELD KVGGSNL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-24	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-24	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-24	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-24	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G134700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU500763	0.0	EU500763.1 Phaseolus vulgaris phosphate high response (PHR1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027933129.1	0.0	myb family transcription factor PHL7 isoform X1
Refseq	XP_027933130.1	0.0	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	1e-116	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	B4YEQ7	0.0	B4YEQ7_PHAVU; Phosphate high response
STRING	GLYMA15G12940.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-96	G2-like family protein

Link Out ? help Back to Top
Phytozome	Phvul.006G134700.1

Publications ? help Back to Top
Vald Essential role of MYB transcription factor: PvPHR1 and microRNA: PvmiR399 in phosphorus-deficiency signalling in common bean roots. Plant Cell Environ., 2008. 31(12): p. 1834-43 [PMID:18771575]