PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.006G132500.1

Common Name

PHAVU_006G132500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

FAR1

Protein Properties

Length: 708aa MW: 81506.9 Da PI: 5.8882

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.006G132500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.5	4.6e-23	98	182	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YAke+GF +r+++s ++++++e + ++C++eg++++++ + ++r+etrtgC a++++++ ++++w+v++++leHnH++ Phvul.006G132500.1 98 NYYNTYAKEIGFATRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEAN-----SHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFD 182 69**************************************99888.....999******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-20	98	182	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-28	303	396	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.693	589	625	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.7E-6	600	627	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MTDDTMCSPS DKDLSLSPNL DITIDDSSPN SEQLLDIVDE GNELDNECGQ LFDIDGSERE 60 NGRDETTVVD SHSGESQGKD CPPPVVGMEF DTYDDAYNYY NTYAKEIGFA TRVKSSWTKR 120 NSKEKRGAVL CCNCEGFKTT KEANSHRKET RTGCLAMIRL RLVESNRWRV DEVKLEHNHS 180 FDPERAQNSK SHKRMDSRAK RKVEPTLDVE VRTIKLYRMP VVDASGYGSS NSTEGGTSNH 240 INCSKRLKLK RGDLELISNY FCRIQLTNPN FFYVMDLNDD GQLRNVFWIE SRSRAAYSYF 300 GDVVAFDSTC LSNNYEIPLV AFVGVNHHGK SVLLGCGLLA DETFETYIWL FRAWLTCMTG 360 RPPQTMITNK CKALQSAIAE VFPRAHHRIC LSQVMQSILG CFVQFQEYEA FQIALTKVIY 420 DSKTVDEFER AWDDLTQHFG IRNHEKILTL HEEREHWAPV YSKDTFFAGI SDYEKGESVV 480 PFFKGHVHQQ TSLKEFFEIY ELVQQKKHKT EVLDDFESCD LSSLLKTRCY YELQISKLYT 540 NAVFRKFQDE VVMMPSCFSI TQTQTSGSVV TYMVKEREGE DPATDARHFE VIYDKGGTEV 600 RCICSCFNFK GYLCRHALYI LNYNGVEEIP CQYILSRWRK DFKRLYVPHL SADNVDISNP 660 VQCFDHLYKR AMQVVEEGMI SQDHYMVSWQ AFKESLNKVR LVADKIE*

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MTDDTMCSPS DKDLSLSPNL DITIDDSSPN SEQLLDIVDE GNELDNECGQ LFDIDGSERE  60
NGRDETTVVD SHSGESQGKD CPPPVVGMEF DTYDDAYNYY NTYAKEIGFA TRVKSSWTKR  120
NSKEKRGAVL CCNCEGFKTT KEANSHRKET RTGCLAMIRL RLVESNRWRV DEVKLEHNHS  180
FDPERAQNSK SHKRMDSRAK RKVEPTLDVE VRTIKLYRMP VVDASGYGSS NSTEGGTSNH  240
INCSKRLKLK RGDLELISNY FCRIQLTNPN FFYVMDLNDD GQLRNVFWIE SRSRAAYSYF  300
GDVVAFDSTC LSNNYEIPLV AFVGVNHHGK SVLLGCGLLA DETFETYIWL FRAWLTCMTG  360
RPPQTMITNK CKALQSAIAE VFPRAHHRIC LSQVMQSILG CFVQFQEYEA FQIALTKVIY  420
DSKTVDEFER AWDDLTQHFG IRNHEKILTL HEEREHWAPV YSKDTFFAGI SDYEKGESVV  480
PFFKGHVHQQ TSLKEFFEIY ELVQQKKHKT EVLDDFESCD LSSLLKTRCY YELQISKLYT  540
NAVFRKFQDE VVMMPSCFSI TQTQTSGSVV TYMVKEREGE DPATDARHFE VIYDKGGTEV  600
RCICSCFNFK GYLCRHALYI LNYNGVEEIP CQYILSRWRK DFKRLYVPHL SADNVDISNP  660
VQCFDHLYKR AMQVVEEGMI SQDHYMVSWQ AFKESLNKVR LVADKIE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.006G132500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007147532.1	0.0	hypothetical protein PHAVU_006G132500g
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	V7BSI1	0.0	V7BSI1_PHAVU; Uncharacterized protein
STRING	XP_007147532.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	Phvul.006G132500.1
Entrez Gene	18628683

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]