PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G126600.1
Common NamePHAVU_006G126600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 699aa    MW: 79608.3 Da    PI: 6.7877
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G126600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.7e-183787656
                        S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                         ++++ +  Lee+F+k+++p++++r ++A++lgL+ +qVk+WFqN+R++ k
  Phvul.006G126600.1 37 GHNADRTSKLEEMFRKCPHPTKSTRCQIAEELGLDPKQVKFWFQNKRTQIK 87
                        56788899***************************************9987 PP
2START129.73.3e-412164333206
                         HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
               START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                         a +a +elvk+ + +ep Wvkss  +++  vl  ++ +++            ++e +++s+vv   +++lv  +l++   W + +     k
  Phvul.006G126600.1 216 AVAAKEELVKLLCTNEPIWVKSS--NDQRFVLHLESYEQFfprinhfknsqARVESSKDSRVVRIKATELVDMFLNSE-NWENLFStivtK 303
                         678999*****************..555555555544444555556666767*************************9.77777766666* PP

                         EEEEEEECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS
               START  79 aetlevissg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164
                         a t+ev+++g    g+l lm+ e+ +lsplvp R+  f+Ry++q +a++wvivdvSvd ++ ++ ++++ R   +pSg++i++ sn  + +
  Phvul.006G126600.1 304 ARTIEVLENGsnrsGVLLLMNEEMHVLSPLVPsRELCFLRYCEQIEAHSWVIVDVSVDCTNGNN-NPKYWR---FPSGCMIHEISNELCWI 390
                         ***************************************************************9.8*****...***************** PP

                         EEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
               START 165 twvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          wvehv++++++  h+l++ +v++ +a ga +w+  lqr c++
  Phvul.006G126600.1 391 SWVEHVEVDEKIEtHQLYKDIVNNNIAYGAERWLLELQRMCAR 433
                         ************99*************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-161389IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-181890IPR009057Homeodomain-like
PROSITE profilePS5007115.8562989IPR001356Homeobox domain
SMARTSM003891.1E-153093IPR001356Homeobox domain
CDDcd000865.17E-143289No hitNo description
PfamPF000463.2E-153787IPR001356Homeobox domain
PROSITE patternPS0002706487IPR017970Homeobox, conserved site
PROSITE profilePS5084840.433205436IPR002913START domain
SuperFamilySSF559612.93E-26207435No hitNo description
CDDcd088751.93E-86209432No hitNo description
SMARTSM002343.3E-28214433IPR002913START domain
PfamPF018525.3E-35216433IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-5271399IPR023393START-like domain
SuperFamilySSF559614.95E-11458687No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MDFAMGGAGG SGDDHHNHNH NYSHNKISNK GKKAYHGHNA DRTSKLEEMF RKCPHPTKST  60
RCQIAEELGL DPKQVKFWFQ NKRTQIKTQT ERTNNSIFRI ENERIRNDNL LLREAFKNII  120
CPSCGGPSNV DEKRQRSLEQ LRLENARLRE EHEKVSSALE KYMDKPMLDL NMDYTLMRGS  180
SSQGGSMSGS FQDEDTMSNL GRKITQVEKT MMSQTAVAAK EELVKLLCTN EPIWVKSSND  240
QRFVLHLESY EQFFPRINHF KNSQARVESS KDSRVVRIKA TELVDMFLNS ENWENLFSTI  300
VTKARTIEVL ENGSNRSGVL LLMNEEMHVL SPLVPSRELC FLRYCEQIEA HSWVIVDVSV  360
DCTNGNNNPK YWRFPSGCMI HEISNELCWI SWVEHVEVDE KIETHQLYKD IVNNNIAYGA  420
ERWLLELQRM CARFSSVGVE CIPNYDSYGV ITTLGGRKNM MRFSDQMVKN FYGILNMVST  480
KRDFPEHLAE ENINIRITTR KYTNSSLSNG MIIFIATTSF RLPLPSENVF DFFRDPIKRA  540
KWDVMCYESP VHEVARISIG TQPSNYISII QPVHRNANNM AIIQESCIDP LGSYVVYSPI  600
NISDIKMAIN GEESTTLAIF PSGIVISKDE QSITNASAWS SGSDDTRTHS TLLTVAFQIM  660
MNGPTTMIAE SKTVVNSLMT STIQNINHAL INGSNLEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G126600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-110AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147461.10.0hypothetical protein PHAVU_006G126600g
TrEMBLV7BQY00.0V7BQY0_PHAVU; Uncharacterized protein
STRINGXP_007147461.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-164homeodomain GLABROUS 11