PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G120800.1
Common NamePHAVU_006G120800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 330aa    MW: 37237.2 Da    PI: 6.5226
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G120800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569e-182572148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT +Ed+ l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
  Phvul.006G120800.1 25 RGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 72
                        89********************************************97 PP
2Myb_DNA-binding48.52e-1578121146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Phvul.006G120800.1  78 RGNITLEEQLLILELHGRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 121
                         7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.2322076IPR017930Myb domain
SuperFamilySSF466891.48E-3022119IPR009057Homeodomain-like
SMARTSM007171.4E-142474IPR001005SANT/Myb domain
PfamPF002493.5E-162572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-222679IPR009057Homeodomain-like
CDDcd001671.52E-112772No hitNo description
PROSITE profilePS5129417.99477127IPR017930Myb domain
SMARTSM007171.0E-1377125IPR001005SANT/Myb domain
PfamPF002493.5E-1478121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2280126IPR009057Homeodomain-like
CDDcd001672.27E-793121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEVKGRVSNS TGTIVQSEDE IDLRRGPWTV DEDLALINYI ANHGEGRWNS LARSAGLKRT  60
GKSCRLRWLN YLRPDVRRGN ITLEEQLLIL ELHGRWGNRW SKIAQYLPGR TDNEIKNYWR  120
TRVQKHAKQL KCDVNSKQFK DAMRYLWMPR LVERIQAAAA TATAGSPTAS ASATTTITNN  180
NNTTYNYNNN LNNSFEVHSG NMMLSPAIMN NNFGGSQSYT PENSSTGASS DSFGTQVSPV  240
SELTQDYYNN VTVVNSNNNN NPNPDYYPQV QDQLSFLDCI TSPSGLFSQQ LDFQSMEPNT  300
PWIQSNGDTY NGFWNVENML LFQQLTDNM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252211924120MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G120800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147396.10.0hypothetical protein PHAVU_006G120800g
TrEMBLV7BQR20.0V7BQR2_PHAVU; Uncharacterized protein
STRINGXP_007147396.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.17e-85myb domain protein 78