PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G114300.1
Common NamePHAVU_006G114300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 718aa    MW: 79712.8 Da    PI: 6.4691
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G114300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51.1e-22134234198
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt sd++++g +++ +++a+e+       + +++  ++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF  
  Phvul.006G114300.1 134 FSKILTASDTSTHGGFSVLRRHATEClpqldmtQTIPT--QELAAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL- 221
                         889*************************9986544444..58************************************************. PP

                         -SSSEE..EEEEE- CS
                  B3  85 dgrsefelvvkvfr 98 
                          + +++el+v+v+r
  Phvul.006G114300.1 222 -RGENGELRVGVRR 234
                         .449999*****98 PP
2Auxin_resp97.12.7e-32260338183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha+ t+++F v+Y+Pr+  s+F++ ++k+++++ +k+svGmRfkm+fe eds+err+sGt+vgv d++p  W+nS+WrsLk
  Phvul.006G114300.1 260 ASHAFLTSTMFVVYYKPRT--SQFIIGLNKYLESV-NKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSP-GWRNSQWRSLK 338
                         679999************6..9*************.89*********************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-40122263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-38128249IPR015300DNA-binding pseudobarrel domain
CDDcd100173.95E-19132234No hitNo description
PfamPF023621.6E-20134234IPR003340B3 DNA binding domain
SMARTSM010196.9E-21134236IPR003340B3 DNA binding domain
PROSITE profilePS5086311.984134236IPR003340B3 DNA binding domain
PfamPF065071.0E-28260338IPR010525Auxin response factor
PfamPF023097.4E-6583631IPR033389AUX/IAA domain
SuperFamilySSF542774.45E-12591671No hitNo description
PROSITE profilePS5174523.937595676IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MAHLEAAVRS VPSSQPETGV EDGDLYTQLW KLCAGPLVDV PCEGERVFYF PQGHMEQLQA  60
STNQGLNQEL NQQIPHFNLP SKILCRVVHI QLLAEQETDE VYARITLLPE SNQEEPTTPD  120
PSVPETQKQS FHSFSKILTA SDTSTHGGFS VLRRHATECL PQLDMTQTIP TQELAAKDLH  180
GFEWKFKHIF RGQPRRHLLT TGWSTFVTSK RLVAGDAFVF LRGENGELRV GVRRVARQQS  240
PMPSSVISSQ SMHLGVLATA SHAFLTSTMF VVYYKPRTSQ FIIGLNKYLE SVNKFSVGMR  300
FKMRFEVEDS PERRFSGTIV GVGDVSPGWR NSQWRSLKAQ WDEPAIIPRP ERVSSWEIEP  360
FVASTALNVT QQVVKSKRSR PPEVSSSEIG PNSPATALWY HGPSLSHDPT ALGGTSEVQS  420
NESPVIWSTR MKEINVNPMN GNKSSSSRVR VEGMWPSSPH LSVSSNLFPD PKNSKAVTAQ  480
SNVSGYAPVS CRPNDDLAHD PVECGKRSEN PMDCWVFGVN LTNNFTNVAL PDKELGCPAI  540
IIPSGPKDSI PVAACETQAG QNHNYSLSNK VQKQIISDGS PSERHAKQAT VPSTRTRTKV  600
QMQGVAVGRA VDLTVIKDYE ALIDELEKIF DIKGELRMQT KWAITFTDDE NDMMLAGDDP  660
WPEFCCMAKR IFICSREDVN KLKNKHSACS SEAEETLLSQ DSQNREETQQ VSCDLTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1651936113355Auxin response factor 1
4ldw_A1e-1651936113355Auxin response factor 1
4ldw_B1e-1651936113355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G114300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147325.10.0hypothetical protein PHAVU_006G114300g
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLV7BMV70.0V7BMV7_PHAVU; Auxin response factor
STRINGXP_007147325.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]