PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G104700.1 | ||||||||
Common Name | PHAVU_006G104700g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | G2-like | ||||||||
Protein Properties | Length: 404aa MW: 44831.7 Da PI: 4.6925 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.4 | 7.5e-34 | 193 | 247 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk +l++mkv+gLt++hvkSHLQkYR+ Phvul.006G104700.1 193 KTRMRWTPELHEAFVEAVNQLGGSERATPKGVLNVMKVDGLTIYHVKSHLQKYRT 247 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.234 | 190 | 250 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-31 | 191 | 249 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.04E-17 | 191 | 247 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.2E-25 | 193 | 247 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-9 | 195 | 246 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 5.7E-21 | 280 | 324 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MSSSSRVLPT PLENKYMKPP DSCHLSPASD LAANSVSSNS VRSAANPDGT LFSYASQHDK 60 QYEDPPFVPQ TLGDNVSSEI HSTTFISHPH ENEDITWGPD PFQDIIGFPE NISAQHDQVV 120 ENGCYINDDN VKRTDFGEWV DQLMSIDDSL HPNWSQLLGD DNVAEPKPKV PQLLDIPSGE 180 VVGNSAATTP QTKTRMRWTP ELHEAFVEAV NQLGGSERAT PKGVLNVMKV DGLTIYHVKS 240 HLQKYRTARY KPEPSEGTSE KKATPIEEMK SLDLKTSKGI TEALRLQMEL QKRLHEQLEI 300 QRKLQIQIED QGKRLQMMFE KQREMGDKKV NGSSDEAATA TPAAPSDSVL PSSPPVETSN 360 EGREKSMEEE KEESTKQKAR EGEEVINEDE DEVAPATKRV KSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-31 | 193 | 251 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-31 | 193 | 251 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-31 | 193 | 251 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-31 | 193 | 251 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-31 | 193 | 251 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-31 | 193 | 251 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-31 | 193 | 251 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-31 | 193 | 251 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G104700.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN201527 | 0.0 | JN201527.1 Glycine max PHR2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007147208.1 | 0.0 | hypothetical protein PHAVU_006G104700g | ||||
Swissprot | Q8GUN5 | 1e-93 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | V7BMN3 | 0.0 | V7BMN3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007147208.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 4e-88 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G104700.1 |
Entrez Gene | 18628400 |
Publications ? help Back to Top | |||
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