PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G090800.1
Common NamePHAVU_006G090800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 548aa    MW: 60213.5 Da    PI: 9.2561
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G090800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-05143165123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++C+k F r  nL+ H r H
  Phvul.006G090800.1 143 FVCEICNKGFQRDQNLQLHRRGH 165
                         89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.55E-6142165No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5142165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.017143165IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949143165IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
SMARTSM00355110184214IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.3E-4207240IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.55E-6214239No hitNo description
SMARTSM00355150219239IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
SPHHKKESFV GFVYIPHFHQ THLLSFIFLS FSLCKNQRVK TNTGLGRKRR ESMSNSNITS  60
CDSWSFSTEN TGEDAGAVKQ KLEMLGQLHS PNSNTSTTTN NSNGSNTTSQ PPHKKKRNLP  120
GNPDPNAEVV ALSPNTLVAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKLRTTTEVK  180
KRVYVCPEAS CVHHNPARAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV HSDWKAHSKI  240
CGTKEYKCDC GTIFSRRDSF ITHRAFCDAL SDENNKFNEA SIMHGSNLQP PIIPNLVASL  300
PINTNNHKQP LSLPHDLIAT IPPKPFNNNI SAFTRTLSST SSPSQLCSNS PNINMFEENA  360
QTHMSATALL QKAAQMGATV NSSNNSMMTE KGFATSMAPP SYGVMNHHHI HSQQDLSHYN  420
NFHANGTMMD GGGNSMGSGM SGLDMFNAIL DQSKALSKII EQNNRSSYSD VLHAMNNGRS  480
TTSIDVGGAK GGENVMTLDL LGIGGGGGDG SFFGGEQSEL KMEYGEISQI RIQGLNQFQQ  540
QTAAYEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-32215281369Zinc finger protein JACKDAW
5b3h_F2e-32215281369Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G090800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147037.10.0hypothetical protein PHAVU_006G090800g, partial
TrEMBLV7BR250.0V7BR25_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007147037.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.14e-95C2H2 family protein