PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G064600.1
Common NamePHAVU_006G064600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 437aa    MW: 49115.2 Da    PI: 9.8633
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G064600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605e-19135181148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g WT+eEd +l+++vkq+G+g W+ Ia+++  gR +kqc++rw+++l
  Phvul.006G064600.1 135 KGQWTEEEDRKLLKLVKQHGTGKWSQIAEKLD-GRAGKQCRERWHNHL 181
                         799*****************************.*************97 PP
2Myb_DNA-binding574.6e-18187229145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++W++eE+ +lv+++++lG++ W+ Ia+ m  gRt++ +k++w+
  Phvul.006G064600.1 187 KDAWSEEEERILVQYHAKLGNR-WAEIAKQMK-GRTENAIKNHWN 229
                         679*******************.********9.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.993130185IPR017930Myb domain
SuperFamilySSF466891.26E-31132228IPR009057Homeodomain-like
SMARTSM007171.6E-17134183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-28136188IPR009057Homeodomain-like
PfamPF139211.9E-20138195No hitNo description
CDDcd001672.72E-16138181No hitNo description
SMARTSM007171.6E-16186234IPR001005SANT/Myb domain
PROSITE profilePS5129421.848186236IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-21189234IPR009057Homeodomain-like
CDDcd001675.33E-13189232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MKSIGGGGAI IPVNGCGNIK VSNPSKCSVG PPLTAIERFL WAQQSHTTQQ PPQNVVNKIH  60
ASALDGFGGS TYNIVWNNGA REVNFVEQLL ANEVALNWTQ QVPPLCLKED LHVSGKNRKR  120
VGRRPKEGSS VPLIKGQWTE EEDRKLLKLV KQHGTGKWSQ IAEKLDGRAG KQCRERWHNH  180
LRPDIKKDAW SEEEERILVQ YHAKLGNRWA EIAKQMKGRT ENAIKNHWNA TKRRQNSRRK  240
NKRPGIANGK PLSSILQDYI KSLALTNTST PSVEQTLAPQ HLADIVVTND NFSLMSESYD  300
DEMFFMQQLL DQNNIIVESV KQTKNINNSS AAFDGYHKQT SNNSQFLTEV TPSGSVHSNL  360
TNSHMSFDES LFHSKRTPTA VSFLDFDVCL SHLHNGTSGS SFFNNNGIHN QNMELHLGKQ  420
DCFEERKIIK RNSIQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-431332352104C-Myb DNA-Binding Domain
1msf_C2e-431332352104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231242KRRQNSRRKNKR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G064600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-151AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146726.10.0hypothetical protein PHAVU_006G064600g
TrEMBLV7BNU60.0V7BNU6_PHAVU; Uncharacterized protein
STRINGXP_007146726.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-61myb domain protein 119