PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G053400.1
Common NamePHAVU_006G053400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 546aa    MW: 61186.3 Da    PI: 4.9549
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G053400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS428.36.2e-1311755451374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l+e L++cA+a++ +d+  +++++++ ++++s  g+p+qRl ay++e L ar+a s+s++yk+l++se +     e l+++++++ev+P++
  Phvul.006G053400.1 175 LKEMLYTCAKAMAVKDMVITEWMMSESRKMVSVLGNPIQRLGAYIVESLVARMAASGSTIYKSLKCSEPT---GNELLSYMHVLYEVCPYF 262
                         5789*****************************************************************9...99**************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         kf+++ aN aI ea++ e++vHiiDf+isqG+QW++L+qaLa Rp+gpp++Ri gv+++ s+  +   l  +g+rL+ +Ae+++vpfefn+
  Phvul.006G053400.1 263 KFGYMSANGAIAEALKDESEVHIIDFQISQGTQWVSLIQALARRPGGPPNIRISGVDDSFSSyaRGGGLDIVGKRLSALAESCNVPFEFNA 353
                         **********************************************************776688999************************ PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          v    ++++l++L+++p Ea+aVn++++lh+++desv+ +++rd++L+l k+lsPkvv++veqe ++n+++Fl+rf+e+++yy a+fds+
  Phvul.006G053400.1 354 -VRVPASQVQLKDLELRPYEAVAVNFAIMLHHVPDESVNGHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAVFDSI 443
                         .7999************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         +a lpre++eri+vE+++l+re+vn++aceg+er+erhe l+kWr+r+++aGF p+pl++ +++++k ll++++++ y++ee++g+l+lgW
  Phvul.006G053400.1 444 DAALPREHKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTQAGFAPYPLNSVINSSIKDLLQTYHGH-YSLEEKDGALFLGW 533
                         **************************************************************************77.************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k++ L++ +aWr
  Phvul.006G053400.1 534 KNQVLIASCAWR 545
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.357149526IPR005202Transcription factor GRAS
PfamPF035142.1E-128175545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQTSQNHKIS YGSGGFYVEP VQNLESYCLP SSENIDNYSS DNSSQTTYPS VQTLDQYLTL  60
ESASTSNSFP CQNSPPALSF SSNNSPLSNL ESNSYVLRPQ HSLEIANGPP ENDSYPILDF  120
DELTHKIREL ETAMLEPNAD MLDIYGAIMP GEADSILLET EKWKEMMEMV SRGDLKEMLY  180
TCAKAMAVKD MVITEWMMSE SRKMVSVLGN PIQRLGAYIV ESLVARMAAS GSTIYKSLKC  240
SEPTGNELLS YMHVLYEVCP YFKFGYMSAN GAIAEALKDE SEVHIIDFQI SQGTQWVSLI  300
QALARRPGGP PNIRISGVDD SFSSYARGGG LDIVGKRLSA LAESCNVPFE FNAVRVPASQ  360
VQLKDLELRP YEAVAVNFAI MLHHVPDESV NGHNHRDRLL RLAKHLSPKV VTLVEQEFNT  420
NNAPFLQRFV ETMNYYLAVF DSIDAALPRE HKERINVEQH CLAREVVNLI ACEGEERVER  480
HELLNKWRMR FTQAGFAPYP LNSVINSSIK DLLQTYHGHY SLEEKDGALF LGWKNQVLIA  540
SCAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-601795458375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G053400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146593.10.0hypothetical protein PHAVU_006G053400g
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLV7BKT40.0V7BKT4_PHAVU; Uncharacterized protein
STRINGXP_007146593.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]