PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.006G020200.1 | ||||||||
Common Name | PHAVU_006G020200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | MYB | ||||||||
Protein Properties | Length: 526aa MW: 58403.8 Da PI: 4.7926 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.6e-17 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l+++v+++G g+W+++ ++ g+ R++k+c++rw ++l Phvul.006G020200.1 40 KGPWTAAEDAILLEYVNKHGQGNWNAVQKYSGLARCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.2e-16 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ Phvul.006G020200.1 93 KGAFTEEEENRILELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 136 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.669 | 35 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-30 | 37 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 39 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-16 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.64E-12 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 25.22 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-16 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 93 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.65E-12 | 95 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 95 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MSSVTSGGDN RKIYRGCRSS SLDEEGEVGG NMGGEVPLKK GPWTAAEDAI LLEYVNKHGQ 60 GNWNAVQKYS GLARCGKSCR LRWANHLRPD LKKGAFTEEE ENRILELHAK MGNKWARMAA 120 ELPGRTDNEI KNYWNTRIKR MQRAGLPIYP PELCERILNA NQESQNICPL TVEASQHDNL 180 LQTDQFDIQD MDFKTVKFHH GPSQVPGILD IPENLFEQCS DSSHLFPTLY PSKRLRESEI 240 LYNSFGSCTA NALQLFDQYG NYIGEKIYDH PRFYPPFESV LNTSNQFHGD NINGSHAMLN 300 GNVSSSVPLF GARKLELPSL QYTETQHGSW VTHGSPLPSL ESVDTLIQSP PVESIPSDLI 360 SPQSSGLLEA IVYNSKSMKD SNTDLFFPVI TGASNEAAGS STLNHPYKTE WDEQGESNSP 420 LGQSAASVMT DYTPISSVDG PQSIETIQDH DDKLEALTWF PNSSWKKEKS EQIDFSQRPD 480 ALFDLAWFGS NTECGISQSD LKDALSALLG EDYKSNFGED SKGKQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-30 | 38 | 140 | 5 | 106 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.006G020200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007146191.1 | 0.0 | hypothetical protein PHAVU_006G020200g | ||||
TrEMBL | V7BMB0 | 0.0 | V7BMB0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007146191.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 4e-94 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.006G020200.1 |
Entrez Gene | 18627510 |