PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G180600.1
Common NamePHAVU_005G180600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 209aa    MW: 23756.4 Da    PI: 5.8126
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G180600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-173078254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                        +y+GVr+++ +g+Wv+eIr+p        +r++lg+f  ae+Aa+a+++a++ + 
  Phvul.005G180600.1 30 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFELAEDAARAYDEAARLMC 78
                        69******9.**********8.....334**********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-322989No hitNo description
PfamPF008472.2E-103079IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-333087IPR001471AP2/ERF domain
SMARTSM003803.1E-393093IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-203089IPR016177DNA-binding domain
PROSITE profilePS5103220.4023087IPR001471AP2/ERF domain
PRINTSPR003673.5E-103142IPR001471AP2/ERF domain
PRINTSPR003673.5E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTTSLSHSER HFTNKFEPPI TIIMARPQQR YRGVRQRHWG SWVSEIRHPL LKTRIWLGTF  60
ELAEDAARAY DEAARLMCGP KARTNFPYNP NDPQSSSSKL LSATLTAKLH KCHMASLSLQ  120
RKQKESQEMA EGSSNSGNAV AGTSEDTTGF RWAEKRHEEV QWLEEEHAEV GEAEQQQFQP  180
VLEDDHIEQM IQELLDYGSM ELSSVDSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-163191667ATERF1
3gcc_A4e-163191667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G180600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-161AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150787.11e-156hypothetical protein PHAVU_005G180600g
SwissprotQ94AW54e-74ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLV7C1K91e-154V7C1K9_PHAVU; Uncharacterized protein
STRINGXP_007150787.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-50ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]