PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G158800.1 | ||||||||
Common Name | PHAVU_005G158800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 173aa MW: 20108.2 Da PI: 10.3207 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.4 | 2.1e-37 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 aCaaCk++rrkC ++C+lap fp++++k+f +h+lFG+ ++++++k l++ +r++am++++ye+++ra+dPv G++++i++lq+q++ ++ Phvul.005G158800.1 10 ACAACKYQRRKCGSKCILAPFFPHHREKQFLLAHRLFGVGKITNMIKPLDPGRRNIAMATIIYESDMRAKDPVGGCLRIIQNLQSQIAYSQ 100 7****************************************************************************************** PP DUF260 92 aelallke 99 +el+l+ + Phvul.005G158800.1 101 TELQLMLQ 108 **998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.509 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.1E-35 | 10 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MNDSRSSTQA CAACKYQRRK CGSKCILAPF FPHHREKQFL LAHRLFGVGK ITNMIKPLDP 60 GRRNIAMATI IYESDMRAKD PVGGCLRIIQ NLQSQIAYSQ TELQLMLQHL AFFRRSSPPP 120 SFSSHPSPLP FQFQHQFKSR GPLQIQEEKD PYHLLQEDIK LETDNQDAWR RRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-21 | 11 | 103 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-21 | 11 | 103 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G158800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007150515.1 | 1e-127 | hypothetical protein PHAVU_005G158800g, partial | ||||
Swissprot | Q9LRW1 | 3e-41 | LBD22_ARATH; LOB domain-containing protein 22 | ||||
TrEMBL | V7BX41 | 1e-126 | V7BX41_PHAVU; Uncharacterized protein (Fragment) | ||||
STRING | XP_007150515.1 | 1e-127 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4133 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 6e-42 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G158800.1 |
Entrez Gene | 18631232 |
Publications ? help Back to Top | |||
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