PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G156100.1
Common NamePHAVU_005G156100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YA
Protein Properties Length: 295aa    MW: 32848.4 Da    PI: 8.9181
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G156100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1002.5e-31172228158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVN+KQy++Il+RRq+Rakle ++k  +k rkpylheSRh hAl+R+Rg gGrF
  Phvul.005G156100.1 172 EEPIYVNSKQYHAILRRRQNRAKLEVQNKP-IKDRKPYLHESRHLHALKRARGAGGRF 228
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-35170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.509171231IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-25173228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-23174196IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-23205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MNCLCEKDCG LFSSHSTSPN VLGCPSWGPS ESRSLSLKVD AQPQQCHRTK TLSFQFQELD  60
SSSTHSGQSS TKLGSSQSGQ MSVEHSSTDS THGIRSFMGN QDFTFPPPLL DHSQTLAHIA  120
GHYADPGYSS LMASSYGSQF KHEDQKNTDE IPNVQPVETA PIRIPLQLDI TEEPIYVNSK  180
QYHAILRRRQ NRAKLEVQNK PIKDRKPYLH ESRHLHALKR ARGAGGRFLN TKKLQQSTRT  240
RGNTAESSMH QMKNYRDGDD NATYASNSDA RNMQNHTSDK GGGTTQQHPL FVYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18172233263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G156100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150405e-91AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150480.10.0hypothetical protein PHAVU_005G156100g
TrEMBLV7BX040.0V7BX04_PHAVU; Uncharacterized protein
STRINGXP_007150480.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.42e-46nuclear factor Y, subunit A8