PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G155100.3

Common Name

PHAVU_005G155100g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Nin-like

Protein Properties

Length: 979aa MW: 107671 Da PI: 6.5037

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G155100.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.8e-29	600	650	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Phvul.005G155100.3 600 EKSVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKV 650 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.063	584	670	IPR003035	RWP-RK domain
Pfam	PF02042	7.0E-26	603	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.13E-20	873	960	No hit	No description
SMART	SM00666	7.9E-19	878	960	IPR000270	PB1 domain
PROSITE profile	PS51745	18.689	878	958	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	3.7E-21	879	959	No hit	No description
Pfam	PF00564	3.8E-15	881	959	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 979 aa Download sequence Send to blast
MEYPFSSKGR EIGDWQSSGT QLVGSTSLDA RMSNSISEDM SNSFSELMSF DTYAGLCNSP 60 SISDQILANE LPSFASLSYS LPDGFNIVQQ NNGQCYMSEV GRNNNDMESS PIYGEKVACQ 120 QMDTLLGFLS DANEANNLNS KLKVNGSPQH LNNSVAGNYI MSRPPALSLD ERMLRALSFF 180 KESAGGGILA QVWVPIKDGD QLILSTSEQP YLLDQMLAGY REVSRTFTFS AEGKSDCFLG 240 LPGRVFTSKV HEWTSNVGYY SMNEYLRFEH AVNHHVRGSI AFPIFDVHSE LSCCAVLEIV 300 TTKEKPDFSR EFEIVCRALQ LVNLRTVKPL RCLPQCLSNN KKATLTEIVD VLRSVCHAHR 360 LPLALTWLPC CYTEGSRGEA TRIIKGGHST NSGKSILCIE ESACYITDRA LEGFVRACTE 420 HPLEEGKGIA GKALRSNHPF FCPDVKTYDV SEYPLVHHAR KYNLNAAVAI RLRSTYTNND 480 DYILEFFLPV NMKGGSEQQL LLDNLSGTMQ RICSSLRTVS DIELSRIESS QEGFGKKNAP 540 CFSPLSSRNS EVPLENGDCH SVPMMSLKAT NARDNEIEPS THQGRNGTKR QVQKNRSTSE 600 KSVSLSVLQQ YFSGSLKDAA KNIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV 660 LDSVQGVEGG LKFDPSMGAF VAGGSTIQET DAHKSLLFPE KSIVKDATPI TQKSVSVPPA 720 PCSEVENFAF KLDEKLKKTN AFSVGCSEDS KSMAIDDGSC KMERLCIKVQ DCPEQACLGS 780 VFPKEQDKWI LNKSGLGVEN FKSSIRGQSS NSLFGNQMHI GVDGDAGVIE PNHPSSSSLT 840 DSSNGSGSMM HSISSGSQSF KNQNQSNVKS TIVDSGSKLI VKAIYREDTI RFKFDRSAGC 900 FSLYEEVAAR FKLQTGSFQL KYLDDEEEWV MLVNDADLQE CLEILDDIGT CNVRFLVRDL 960 PLILSSSGSS NCYLGGSS*

Sequence ? help Back to Top

Protein Sequence Length: 979 aa Download sequence Send to blast

MEYPFSSKGR EIGDWQSSGT QLVGSTSLDA RMSNSISEDM SNSFSELMSF DTYAGLCNSP  60
SISDQILANE LPSFASLSYS LPDGFNIVQQ NNGQCYMSEV GRNNNDMESS PIYGEKVACQ  120
QMDTLLGFLS DANEANNLNS KLKVNGSPQH LNNSVAGNYI MSRPPALSLD ERMLRALSFF  180
KESAGGGILA QVWVPIKDGD QLILSTSEQP YLLDQMLAGY REVSRTFTFS AEGKSDCFLG  240
LPGRVFTSKV HEWTSNVGYY SMNEYLRFEH AVNHHVRGSI AFPIFDVHSE LSCCAVLEIV  300
TTKEKPDFSR EFEIVCRALQ LVNLRTVKPL RCLPQCLSNN KKATLTEIVD VLRSVCHAHR  360
LPLALTWLPC CYTEGSRGEA TRIIKGGHST NSGKSILCIE ESACYITDRA LEGFVRACTE  420
HPLEEGKGIA GKALRSNHPF FCPDVKTYDV SEYPLVHHAR KYNLNAAVAI RLRSTYTNND  480
DYILEFFLPV NMKGGSEQQL LLDNLSGTMQ RICSSLRTVS DIELSRIESS QEGFGKKNAP  540
CFSPLSSRNS EVPLENGDCH SVPMMSLKAT NARDNEIEPS THQGRNGTKR QVQKNRSTSE  600
KSVSLSVLQQ YFSGSLKDAA KNIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLKKIQTV  660
LDSVQGVEGG LKFDPSMGAF VAGGSTIQET DAHKSLLFPE KSIVKDATPI TQKSVSVPPA  720
PCSEVENFAF KLDEKLKKTN AFSVGCSEDS KSMAIDDGSC KMERLCIKVQ DCPEQACLGS  780
VFPKEQDKWI LNKSGLGVEN FKSSIRGQSS NSLFGNQMHI GVDGDAGVIE PNHPSSSSLT  840
DSSNGSGSMM HSISSGSQSF KNQNQSNVKS TIVDSGSKLI VKAIYREDTI RFKFDRSAGC  900
FSLYEEVAAR FKLQTGSFQL KYLDDEEEWV MLVNDADLQE CLEILDDIGT CNVRFLVRDL  960
PLILSSSGSS NCYLGGSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G155100.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007150469.1	0.0	hypothetical protein PHAVU_005G155100g
Refseq	XP_007150470.1	0.0	hypothetical protein PHAVU_005G155100g
Refseq	XP_007150471.1	0.0	hypothetical protein PHAVU_005G155100g
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	V7BZI5	0.0	V7BZI5_PHAVU; Uncharacterized protein
STRING	XP_007150469.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Phvul.005G155100.3
Entrez Gene	18631194

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]